Guidelines for collecting vouchers and tissues intended for genomic work (Smithsonian Institution): Botany Best Practices

Vicki Funk; Morgan Gostel; Amanda Devine; Carol Kelloff; Kenneth Wurdack; Chris Tuccinardi; Aleks Radosavljevic; Melinda Peters; Jonathan Coddington

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Morgan R. Gostel, W. John Kress (2022)
The Expanding Role of DNA Barcodes: Indispensable Tools for Ecology, Evolution, and Conservation. Diversity 14: 213.

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Matthew Chidozie Ogwu, Moses Edwin Osawaru, Emmanuel Amodu, Frances Osamo (2023)
Comparative morphology, anatomy and chemotaxonomy of two Cissus Linn. species. Brazilian Journal of Botany 46: 397.

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Matias Köhler, Luíz F. Esser, Fabián Font, Tatiana T. Souza-Chies, Lucas C. Majure (2020)
Beyond endemism, expanding conservation efforts: What can new distribution records reveal?. Perspectives in Plant Ecology, Evolution and Systematics 45: 125543.

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Jacqueline Vergutz Menetrier, Viviane Risso Bonkoski, Kamila Aparecida Medeiros, Daniela Aparecida Estevan, Rhanany Alan Calloi Palozi, Francislaine Aparecida dos Reis Lívero, Leonardo Garcia Velasquez, Emerson Luiz Botelho Lourenço, Arquimedes Gasparotto Junior (2020)
Ethnomedicinal Plants Used for the Treatment of Cardiovascular Diseases by Healers in the Southwestern State of Paraná, Brazil, and Their Validation Based on Scientific Pharmacological Data. Journal of Religion and Health 59: 3004.

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Jose D. Zuniga, Morgan R. Gostel, Daniel G. Mulcahy, Katharine Barker, Asia Hill, Maryam Sedaghatpour, Samantha Q. Vo, Vicki A. Funk, Jonathan A. Coddington (2017)
Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution. PhytoKeys 88: 119.

DOI: 10.3897/phytokeys.88.14607

Morgan R. Gostel, Mónica M. Carlsen, Amanda Devine, Katharine B. Barker, Jonathan A. Coddington, Julia Steier (2022)
Data Release: DNA Barcodes of Plant Species Collected for the Global Genome Initiative for Gardens (GGI-Gardens) II. Diversity 14: 234.

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W. John Kress, Douglas E. Soltis, Paul J. Kersey, Jill L. Wegrzyn, James H. Leebens-Mack, Morgan R. Gostel, Xin Liu, Pamela S. Soltis (2022)
Green plant genomes: What we know in an era of rapidly expanding opportunities. Proceedings of the National Academy of Sciences 119: .

DOI: 10.1073/pnas.2115640118

Amy G. Vandergast, Cheryl S. Brehme, Deborah Iwanowicz, Robert S. Cornman, Devin Adsit‐Morris, Robert N. Fisher (2023)
Fecal metabarcoding of the endangered Pacific pocket mouse (Perognathus longimembris pacificus) reveals a diverse and forb rich diet that reflects local habitat availability. Ecology and Evolution 13: .

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Gillian H. Dean, Rani Asmarayani, Marlina Ardiyani, Yessi Santika, Teguh Triono, Sarah Mathews, Campbell O. Webb (2018)
Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia. Applications in Plant Sciences 6: .

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William N. Weaver, Stephen A. Smith (2023)
FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes. Applications in Plant Sciences 11: .

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Eleanor E. Dormontt, Kor-jent van Dijk, Karen L. Bell, Ed Biffin, Martin F. Breed, Margaret Byrne, Stefan Caddy-Retalic, Francisco Encinas-Viso, Paul G. Nevill, Alison Shapcott, Jennifer M. Young, Michelle Waycott, Andrew J. Lowe (2018)
Advancing DNA Barcoding and Metabarcoding Applications for Plants Requires Systematic Analysis of Herbarium Collections—An Australian Perspective. Frontiers in Ecology and Evolution 6: .

DOI: 10.3389/fevo.2018.00134

Alexander M. Greene, Irene Teixidor-Toneu, Guillaume Odonne (2023)
To Pick or Not to Pick: Photographic Voucher Specimens as an Alternative Method to Botanical Collecting in Ethnobotany. Journal of Ethnobiology 43: 44.

DOI: 10.1177/02780771231162190

Carlos Gómez‐Bellver, Neus Ibáñez, Jordi López‐Pujol, Neus Nualart, Alfonso Susanna (2019)
How photographs can be a complement of herbarium vouchers: A proposal of standardization. TAXON 68: 1321.

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Jeffery K Stallman, Vicki A Funk, Jonathan P Price, Matthew L Knope (2019)
DNA barcodes fail to accurately differentiate species in Hawaiian plant lineages. Botanical Journal of the Linnean Society 190: 374.

DOI: 10.1093/botlinnean/boz024

Jane Eva Collins, Muriel Rabone, Thomas Vanagt, Diva J Amon, Judith Gobin, Isabelle Huys, Robert Blasiak (2021)
Strengthening the global network for sharing of marine biological collections: recommendations for a new agreement for biodiversity beyond national jurisdiction. ICES Journal of Marine Science 78: 305.

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J. Mason Heberling, David J. Burke (2019)
Utilizing herbarium specimens to quantify historical mycorrhizal communities. Applications in Plant Sciences 7: .

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Zubair Ahmad Rather, Anzar Ahmad Khuroo, Abdul Rashid Dar, Tanvir Ul Hassan Dar (2020)
Smartphone-integrated field microscopy (SPFM): a low-cost and portable tool to study live biological specimens in the wild. Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology 154: 757.

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Reannon L. Smith, Tom W. May, Jatinder Kaur, Tim Sawbridge, Ross Mann, Jacky Edwards (2021)
Molecular data from up to 130‐year‐old herbarium specimens do not support the presence of cherry powdery mildew in Australia. Plant Pathology 70: 689.

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Michael R. McKain, Matthew G. Johnson, Simon Uribe‐Convers, Deren Eaton, Ya Yang (2018)
Practical considerations for plant phylogenomics. Applications in Plant Sciences 6: .

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Jorge David López-Pérez, Aarón Rodríguez, Eduardo Ruiz-Sanchez, Pilar Zamora-Tavares, Guadalupe Munguía-Lino (2022)
Filogeografía de Tigridia durangensis (Tigridieae: Iridaceae), una especie endémica de la Zona de Transición Mexicana. Botanical Sciences 100: 1040.

DOI: 10.17129/botsci.3003

J. Mason Heberling, Bonnie L. Isaac (2018)
iNaturalist as a tool to expand the research value of museum specimens. Applications in Plant Sciences 6: .

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Claudia González‐Toral, Eduardo Cires (2022)
Relevance of DNA preservation for future botany and ecology. Molecular Ecology 31: 5125.

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S. James Carey, L. Ellie Becklund, Paige P. Fabre, John J. Schenk (2023)
Optimizing the lysis step in CTAB DNA extractions of silica‐dried and herbarium leaf tissues. Applications in Plant Sciences 11: .

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Vicki A. Funk, Robert Edwards, Sterling Keeley (2018)
The problem with(out) vouchers. TAXON 67: 3.

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Ashebir Gogile, Dennis Knierim, Paolo Margaria, Wulf Menzel, Mereme Abide, Misrak Kebede, Dawit Kidanemariam, Adane Abraham (2024)
White yam (Dioscorea rotundata) plants exhibiting virus-like symptoms are co-infected with a new potyvirus and a new crinivirus in Ethiopia. Virus Genes 60: 423.

DOI: 10.1007/s11262-024-02077-4

Morgan R. Gostel, Jose D. Zúñiga, W. John Kress, Vicki A. Funk, Caroline Puente-Lelievre (2020)
Microfluidic Enrichment Barcoding (MEBarcoding): a new method for high throughput plant DNA barcoding. Scientific Reports 10: .

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James M. Robertson, Natalie Damaso, Kelly A. Meiklejohn (2021)
Handbook of DNA Profiling. Chapter 59-1: 1.

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Maggie M. Reddy, Laurence Jennings, Olivier P. Thomas (2021)
Progress in the Chemistry of Organic Natural Products 116. Chapter 1: 1.

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James M. Robertson, Natalie Damaso, Kelly A. Meiklejohn (2022)
Handbook of DNA Profiling. Chapter 59: 857.

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