NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden

Quiterie Haenel; Oleksandr Holovachov; Ulf Jondelius; Per Sundberg; Sarah Bourlat

doi:10.3897/BDJ.5.e12731

Oleksandr Holovachov, Quiterie Haenel, Sarah J. Bourlat, Ulf Jondelius (2017)
Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes. Royal Society Open Science 4: 170315.

DOI: 10.1098/rsos.170315

Alexander M. Weigand, Jan-Niklas Macher (2018)
A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy. Metabarcoding and Metagenomics 2: .

DOI: 10.3897/mbmg.2.26869

Maria Fais, Sofia Duarte, Pedro Emanuel Vieira, Ronaldo Sousa, Mehrdad Hajibabaei, Carlos Alberto Canchaya, Filipe Oliveira Costa (2020)
Small-scale spatial variation of meiofaunal communities in Lima estuary (NW Portugal) assessed through metabarcoding. Estuarine, Coastal and Shelf Science 238: 106683.

DOI: 10.1016/j.ecss.2020.106683

Margaux Steyaert, Victoria Priestley, Owen Osborne, Alba Herraiz, Richard Arnold, Vincent Savolainen, Vitor Paiva (2020)
Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos. Journal of Applied Ecology 57: 2234.

DOI: 10.1111/1365-2664.13729

Julius Degenhardt, Sahar Khodami, Felix Milke, Hannelore Waska, Bert Engelen, Pedro Martinez Arbizu (2021)
The Three Domains of Life Within the Discharge Area of a Shallow Subterranean Estuary at a High Energy Beach. Frontiers in Environmental Science 9: .

DOI: 10.3389/fenvs.2021.642098

Maria Fais, Bruno Bellisario, Sofia Duarte, Pedro Emanuel Vieira, Ronaldo Sousa, Carlos Canchaya, Filipe Oliveira Costa (2020)
Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability. Regional Studies in Marine Science 38: 101341.

DOI: 10.1016/j.rsma.2020.101341

L. S. Kravtsova, T. E. Peretolchina, T. I. Triboy, I. A. Nebesnykh, A. E. Tupikin, M. R. Kabilov (2023)
A study of macroinvertebrate communities in Bolshiye Koty Bay of Lake Baikal using DNA metabarcoding. Vavilov Journal of Genetics and Breeding 27: 694.

DOI: 10.18699/VJGB-23-80

François Keck, Marjorie Couton, Florian Altermatt (2023)
Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources 23: 742.

DOI: 10.1111/1755-0998.13746

L. S. Kravtsova, T. E. Peretolchina, T. I. Triboy, I. A. Nebesnykh, A. B. Kupchinskiy, A. E. Tupikin, M. R. Kabilov (2021)
The Study of the Diversity of Hydrobionts from Listvennichny Bay of Lake Baikal by DNA Metabarcoding. Russian Journal of Genetics 57: 460.

DOI: 10.1134/S1022795421040050

Romy Gielings, Maria Fais, Diego Fontaneto, Simon Creer, Filipe Oliveira Costa, Willem Renema, Jan-Niklas Macher (2021)
DNA Metabarcoding Methods for the Study of Marine Benthic Meiofauna: A Review. Frontiers in Marine Science 8: .

DOI: 10.3389/fmars.2021.730063

Sofia Duarte, Pedro E. Vieira, Ana S. Lavrador, Filipe O. Costa (2021)
Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding. Science of The Total Environment 751: 141729.

DOI: 10.1016/j.scitotenv.2020.141729

François Keck, Rosetta C. Blackman, Raphael Bossart, Jeanine Brantschen, Marjorie Couton, Samuel Hürlemann, Dominik Kirschner, Nadine Locher, Heng Zhang, Florian Altermatt (2022)
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology 31: 1820.

DOI: 10.1111/mec.16364

Haris Zafeiropoulos, Laura Gargan, Sanni Hintikka, Christina Pavloudi, Jens Carlsson (2021)
The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: .

DOI: 10.3897/mbmg.5.69657

Sven Rossel, Sahar Khodami, Pedro Martínez Arbizu (2019)
Comparison of Rapid Biodiversity Assessment of Meiobenthos Using MALDI-TOF MS and Metabarcoding. Frontiers in Marine Science 6: .

DOI: 10.3389/fmars.2019.00659

Barbara R. Leite, Pedro E. Vieira, Jesús S. Troncoso, Filipe O. Costa (2021)
Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates. Metabarcoding and Metagenomics 5: .

DOI: 10.3897/mbmg.5.70063

Sofia Duarte, Barbara Leite, Maria Feio, Filipe Costa, Ana Filipe (2021)
Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates. Water 13: 331.

DOI: 10.3390/w13030331

Lyda R. Castro, Rachel S. Meyer, Beth Shapiro, Sabrina Shirazi, Samuel Cutler, Ana M. Lagos, Sigmer Y. Quiroga (2021)
Metabarcoding meiofauna biodiversity assessment in four beaches of Northern Colombia: effects of sampling protocols and primer choice. Hydrobiologia 848: 3407.

DOI: 10.1007/s10750-021-04576-z

Sarah Atherton, Ulf Jondelius (2020)
Biodiversity between sand grains: Meiofauna composition across southern and western Sweden assessed by metabarcoding. Biodiversity Data Journal 8: .

DOI: 10.3897/BDJ.8.e51813

Jan-Niklas Macher, Dimitra Maria Bloska, Maria Holzmann, Elsa B. Girard, Jan Pawlowski, Willem Renema (2022)
Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers. PeerJ 10: e13952.

DOI: 10.7717/peerj.13952

Janina Schenk, Nils Kleinbölting, Walter Traunspurger (2020)
Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities. Ecology and Evolution 10: 2885.

DOI: 10.1002/ece3.6104

Kaisar Ahmad Bhat, Rakeeb Ahmad Mir, Asmat Farooq, Madhiya Manzoor, Ammarah Hami, Kaisar Ahmad Allie, Shaheen Majeed Wani, M. N. Khan, R. Z. Sayyed, Peter Poczai, Waleed Hassan Almalki, Sajad Majeed Zargar, Ali Asghar Shah (2022)
Advances in Nematode Identification: A Journey from Fundamentals to Evolutionary Aspects. Diversity 14: 536.

DOI: 10.3390/d14070536

Hendrik Giebner, Kathrin Langen, Sarah J. Bourlat, Sandra Kukowka, Christoph Mayer, Jonas J. Astrin, Bernhard Misof, Vera G. Fonseca (2020)
Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes. Molecular Ecology Resources 20: 1333.

DOI: 10.1111/1755-0998.13201

Sarah J. Bourlat, Georg F. Tschan, Sebastian Martin, Muhammad Iqram, Sonja Leidenberger (2023)
A red listing gap analysis of molluscs and crustaceans in Northern Europe: What has happened in the last 10 years?. Biological Conservation 286: 110247.

DOI: 10.1016/j.biocon.2023.110247