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Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Elena B. Eder (lebder@gmail.com)
Academic editor: Anton P. van de Putte
Received: 31 Jan 2023 | Accepted: 18 Apr 2023 | Published: 26 Apr 2023
© 2023 Elena Eder, Marcos Zárate, Mirtha Lewis
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Eder EB, Zárate M, Lewis MN (2023) Light and temperature records of the seawater associated with southern elephant seal dives during foraging trips in South Atlantic and Pacific Oceans. Biodiversity Data Journal 11: e101284. https://doi.org/10.3897/BDJ.11.e101284
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The dataset comprises geolocalised records of dive and surface interval durations, light level and temperature of the seawater during the post-resting and post-moulting tracks of 13 immature southern elephant seals, Mirounga leonina. It describes an unpublished open access version of the original data with records of light level and temperature of the water column using the Darwin Core standard (DwC) through ArOBIS, guaranteeing compliance with the FAIR principles, encompassing a wide time scale (2005, 2006 and 2007) and geographic range in the South Atlantic and Pacific Oceans (South West [-58.75, -81.29], North East [-37.60, -28.65]). Seals were simultaneously equipped with affordable light–temperature loggers (LTLs) and satellite tags. The LTLs recorded light level and temperature of the water column at 30-s intervals during dives and light–time records were applied to estimate dive parameters of diurnal records from 06:00 to 17:00 h, since movements up and down the water column are reflected by changes in light level. For that, the minimum light level reached at the surface of a dive was determined experimentally with diurnal dive simulations at sea using the LTLs devices before deployment. The dataset also includes variation of light and temperature of records between 17:00 to 06:00 h. Data can be used to identify temperature changes associated with seawater masses as drivers of the distribution of other taxa of interest and variation of light level in the seawater (light attenuation) could be linked to concentrations of phytoplankton assemblages as an index of primary productivity.
This dataset provides unpublished data of the duration of dives and surface intervals and associated records of light level and temperature variations along the movements throughout the seawater of 13 immature southern elephant seals in the Southern Hemisphere. The location data were generated by satellite tags and the light and temperature data were recorded with light-temperature loggers (LTLs), both devices deployed on individuals simultaneously and uploaded following the Darwin Core standard and compliance with the FAIR principles.
southern elephant seals, Southern Ocean, sea water light-temperature records
Elephant seals belong to the clade of Pinnipeds, a taxonomic group of mammals adapted to marine life that, however, conserve a dependence on the terrestrial environment, amongst other characteristics. During their annual cycle, seals predictably and synchronously alternate brief ashore periods dedicated to breeding, moulting or resting at very high-fidelity sites, with longer periods of exclusively marine feeding (post-breeding, post-moulting or post-resting trips) occupying more than 90% of the annual cycle time (
The dataset presented in this paper covers locations of 13 immature southern elephant seals during their post-resting and post-moulting feeding trips at sea and provides unpublished data of the duration of dives and surface intervals and associated light level and temperature variations along the movements throughout the seawater recorded by LTLs deployed on the individuals, following the DwC standard and compliance with the FAIR principles (
Light and temperature records of the seawater associated with southern elephant seal dives during foraging trips in South Atlantic and Pacific Oceans
Elena Eder, Marcos Zarate and Mirtha Lewis
Agencia Nacional de Promoción Científica y Tecnológica PICT 01- 11749 and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) PIP 02462 Resolución 1123/03, Australian Antarctic Division and National Research Council of Argentina Ph.D. programme (CONICET). The publication of this data paper was supported by the Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS) in the Framework of EU-Lifewatch as a contribution the SCAR Antarctic biodiveristy portal (biodiversity.aq).
The locations and associated data from the seawater (light level and temperature) during the feeding trips of the southern elephant seals encompassed an area between the South Atlantic and Pacific Oceans (South West [-58.75, -81.29], North East [-37.60, -26.54]). Fig.
LTL devices (Platypus Engineering, Sydney, Australia) were deployed simultaneously with satellite tags (SPOT4/SPOT5; Wildlife Computers, Redmond, Washington) on 13 immature southern elephant seals from the Península Valdés colony, Patagonia, Argentina (42°45’S, 63°38’W). The setting and deployment protocols of instruments and their recovery have been described previously in
Estimation of dive durations and surface intervals
The variation of light registered by the LTLs (records were sampled at an interval of 30-s, expressed as hh/mm/ss), were used to estimate the dive durations and the surface intervals of dives, as vertical movements through the water column are reflected by changes in the light level (from maximum value at the surface = 250 arbitrary units, to total darkness in deep water = 2 arbitrary units). Simulations of dives at sea with the instruments under different conditions (different seasons, total, partial or no cloud cover and different orientations of the light sensor), determined a conservative minimum value of saturated light level of 190 units at the sea surface. The details of these simulations to estimate dive duration are described in
Validation and correction of the temperature data
The LTLs measure seawater temperature with a resolution of approximately 0.2ºC, over a range of -12 to 31ºC. However, some devices showed temperature records from -1.1 to 31.1ºC, which may not be appropriate values for the Argentine Sea and the adjacent Oceanic Basin. For this reason, the values of the devices were validated against an autonomous thermometer (Optic StowAway Temp) activated during the diving simulations and a digital thermometer during laboratory tests, to correct the temperature values of the LTLs. Fig.
The LTLs (1-8) and the autonomous thermometer (data logger) temperature profiles during diving simulations at sea. a) From a boat (two dives), during a cloudy day, at a maximum depth of 35 m. b) From a local wharf (four dives with the devices orientated in the positions described in
All records were validated. The coordinates were validated using the check_onland() function of the obistools package to verify if there are points on land. Although the dataset has only one taxon, match_taxa() was used to determine if the taxonomic name is valid. All scientific names were checked for typos and matched to the species information backbone of Worlds Register of Marine Species (http:// marinespecies.org/) and LSID were assigned to taxon as scientificNameID. The original date data columns were converted with the OpenRefine tool to ISO 8601 format, which was assigned to the eventDate field of the Dwc standard. To check the consistency of the eventID and parentEventID fields, the check_eventids() function was used.
The locations during the feeding trips of the southern elephant seals encompassed an area between the South Atlantic and Pacific Oceans (South West [-58.75, -81.29], North East [-37.60, -28.65]). Most of the records are located within the well-known foraging areas of southern elephant seals from the Península Valdés colony. These include the continental shelf, an area of less than 200 m in depth that extends 300-400 km east from the coast and is characterised by mixed coastal and stratified waters (
| Rank | Scientific Name |
|---|---|
| class | Mammalia |
| order | Carnivora |
| family | Phocidae |
| genus | Mirounga |
| kingdom | Mirounga leonina (Linnaeus, 1758) |
Data recorded encompass the post-resting feeding trips of four individuals from the 2005 season, the post-moulting feeding trips of seven individuals from the 2005-2006 season and the post-moulting feeding trips of two individuals from the 2007 season (
MAR3: 2005-07-29/2005-11-14 (108)
BK6: 2005-08-02/2005-11-02 (92)
SI4: 2005-08-08/2005-10-22 (75)
SyS2: 2005-08-15/2005-11-11 (88)
RON6: 2005-12-07/2006-02-17 (72)
LIN3: 2005-12-11/2006-07-11 (216)
SUR1: 2005-12-13/2006-02-07 (56)
RUS2: 2005-12-13/2006-02-23 (72)
BUC10: 2005-12-16/2006-05-06 (141)
FAR11: 2005-12-17/2006-04-22 (126)
PT7: 2005-12-19/2006-04-23 (125)
2LID: 2007-01-04/2007-06-27 (174)
1LID: 2007-01-06/2007-07-29 (204)
This dataset describes an unpublished open access version of the original data with records of light level and temperature of the water column using the Darwin Core standard (DwC) through ArOBIS, guaranteeing compliance with the FAIR principles. The LTLs recorded light level and temperature of the water column at 30-s intervals during dives and light–time records were applied to estimate dive parameters of diurnal records from 06:00 to 17:00 h, since movements up and down the water column are reflected by changes in light level. For that, the minimum light level reached at the surface of a dive was determined experimentally with diurnal dive simulations at sea using the LTLs devices before deployment. As variation of temperature in the water column can be associated with the local distribution of other taxa of interest and variation of light level in the water column (light attenuation) could be linked to concentrations of phytoplankton assemblages as an index of primary productivity, the dataset can be of useful interest. This dataset also includes variation of light and temperature of records between 17:00 to 06:00 h. The dataset encompasses a wide time scale (2005, 2006 and 2007) and covers a wide geographic range in the South Atlantic and Pacific Oceans (South West [-58.75, -81.29], North East [-37.60, -28.65]).
If you have any questions regarding this dataset, please do not hesitate to contact us via the contact information provided in the metadata or via eder@cenpat-conicet.gob.ar.
| Column label | Column description |
|---|---|
| eventID | an identifier for the set of information associated with an Event (something that occurs at a place and time). This may be a global unique identifier or an identifier specific to the dataset. |
| parentEventID | An identifier for the broader Event that groups this and potentially other Events. |
| type | the event type information is provided in this column. |
| eventDate | the date or interval during which an Event occurred. |
| eventTime | the time or interval during which an Event occurred. |
| decimalLatitude | the geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
| decimalLongitude | the geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |
| minimumDepthInMetres | minimum depth during event in metres. |
| maximumDepthInMetres | maximum depth during event in metres. |
| institutionCode | institution code. |
| datasetName | dataset name. |
| occurrenceID | an identifier for the Occurrence/specimen. |
| basisOfRecord | the specific nature of the data record. |
| occurrenceStatus | a statement about the presence or absence of a Taxon at a Location. |
| scientificName | scientific name. |
| scientificNameID | marinespecies.org taxon number. |
| scientificNameAuthorship | the authorship information for the scientificName formatted according to the conventions of the applicable nomenclaturalCode. |
| sex | sex. |
| kingdom | the full scientific name of the kingdom in which the taxon is classified. |
| phylum | the full scientific name of the phylum in whch the taxon is classified. |
| class | the full scientific name of the class in which the taxon is classified. |
| order | the full scientific name of the order in which the taxon is classified. |
| family | the full scientific name of the family in which the taxon is classified. |
| genus | the full scientific name of the genus in which the taxon is classified. |
| taxonRank | the taxonomic rank of the most specific name in the scientificName. |
| measurementType | the nature of the measurement, fact, characteristic or assertion. |
| measurementTypeID | a machine-readable URI or DOI reference describing the (version of the) classification system itself. |
| measurementValue | the value of the measurement, fact, characteristic or assertion. |
| measurementValueID | if available, a machine-readable URI describing the habitat class in “measurementValue”. |
| measurementUnit | the units associated with the measurementValue. |
| measurementUnitID | if available, a machine-readable URI describing the measurement in “measurementUnit”. |
The dataset contains records of locations of 13 immature southern elephant seals, Mirounga leonina, during their post-resting and post-moulting feeding trips at sea. The dataset encompasses a wide time scale (2005, 2006 and 2007) and covers a wide geographic range in the South Atlantic and Pacific Oceans (South West [-58.75, -81.29], North East [-37.60, -28.65]).
| Column label | Column description |
|---|---|
| animalID | A unique identifier for the deployment of a tag on animal. |
| Timestamp | The timestamp when the tag deployment started. Format: yyyy-MM-dd'T'HH:mm:ss'Z' |
| Location lat | The geographic latitude of the location where the animal was. Units: decimal degrees, WGS84 reference system. |
| Location long | The geographic longitude of the location where the animal was. Units: decimal degrees, WGS84 reference system. |
| Comments | Additional information about the tag deployment that is not described by other reference data terms. |
M. Uhart, F. Pérez, J. Guzmán, V. Zavattieri, R. Vera and J. Rúa assisted during the field work and deployment of the equipment and N. Ortiz assisted with the logistical support during dive simulations. Centro Nacional Patagónico-Consejo Nacional de Investigaciones Científicas y Técnicas (CENPAT-CONICET) provided logistical support. The satellite tracking research was financed by Agencia Nacional de Promoción Científica y Tecnológica PICT 01- 11749 and CONICET PIP 02462 Resolución 1123/03. The light–temperature devices were provided by the Australian Antarctic Division. The original research was part of a Ph.D. programme supported by the National Research Council of Argentina (CONICET). The Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS), provided support for the publication of this data paper in the framework of EU-Lifewatch, as a contribution the SCAR Antarctic biodiveristy portal (biodiversity.aq). The research procedures in this study were conducted under permits from Subsecretaría de Conservación y Áreas Protegidas, Ministerio de Turismo and the Dirección de Fauna y Flora Silvestre of Chubut Province.
Elena Eder: conceptualisation; data curation; experiments, analysis and corrections; investigation; methodology; writing – original draft; writing – review and editing. Marcos Zárate: data curation, compliance and preparation of data for submission to GBIF; software; visualisation; writing – review and editing. Mirtha Lewis: supervision; methodology, funding acquisition, writing – review and editing.