Biodiversity Data Journal :
Data Paper (Biosciences)
|
Corresponding author: Magne Neby (magne.neby@inn.no)
Academic editor: Krizler Tanalgo
Received: 04 May 2023 | Accepted: 12 Aug 2023 | Published: 11 Sep 2023
© 2023 Magne Neby, Harry Andreassen, Cyril Milleret, Simen Pedersen, Ana-Maria Peris Tamayo, David Carriondo Sánchez, Erik Versluijs, Barbara Zimmermann
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Neby M, Andreassen H, Milleret CP, Pedersen S, Peris Tamayo A-M, Carriondo Sánchez D, Versluijs E, Zimmermann B (2023) Small rodent monitoring at Birkebeiner Road, Norway. Biodiversity Data Journal 11: e105914. https://doi.org/10.3897/BDJ.11.e105914
|
|
Northern small mammal populations are renowned for their multi-annual population cycles. Population cycles are multi-faceted and have extensive impacts on the rest of the ecosystem. In 2011, we started a student-based research activity to monitor the variation of small rodent density along an elevation gradient following the Birkebeiner Road, in southeast Norway. Fieldwork was conducted by staff and students at the University campus Evenstad, Inland Norway University of Applied Sciences, which has a long history of researching cyclic population dynamics. The faculty has a strong focus on engaging students in all parts of the research activities, including data collection. Small rodents were monitored using a set of snap trap stations. Trapped animals were measured (e.g. body mass, body length, sex) and dissected to assess their reproductive status. We also characterised the vegetation at trapping sites.
We provide a dataset of small rodent observations that show fluctuating population dynamics across an elevation gradient (300 m to 1,100 m a.s.l) and in contrasting habitats. This dataset encompasses three peaks of the typical 3-4-year vole population cycles; the number of small rodents and shrews captured show synchrony and peaked in years 2014, 2017 and 2021. The bank vole Myodes glareolus was by far (87%) the most common species trapped, but also other species were observed (including shrews). We provide digital data collection forms and highlight the importance of long-term data collection.
arvicolinae, vole, shrews, trapping, occurrence, database, dissection
Voles and lemmings in boreal, alpine and arctic ecosystems are renowned for their multi-annual population cycles (
The focus of this study is the understanding and exploration of the population dynamics of arvicoline rodent species, particularly the field vole Microtus agrestis (Linnaeus, 1761) and the bank vole Myodes glareolus (Schreber, 1780), which are amongst the most widespread and abundant mammals in the European boreal biome. Moreover, the ongoing changes in climate and biodiversity, particularly warmer winters, are expected to affect these population dynamics and, consequently, the role these small rodents play in the ecosystem (
Assessing changes can only be observed by comparing the new state with a previous one. Thus, systematic long-term data collection efforts are vital to reveal changes in nature or the lack thereof. Nevertheless, due to long-term data’s innate high degree of replication, the credibility and usefulness of such time series are high in research, management and policy (
Evenstad is located in the southeast of Norway and is a campus at Inland Norway University of Applied Sciences. Evenstad has a long history in ecological investigations (e.g.
Birkebeinervegen monitoring (alias Birkebeinervegen rodent trapping).
Personnel: Over different years, the co-authors have led the sampling in the field and/or lab, with a yearly turnover of student participation.
Study area description: The study area is located in the southeast of Norway, in Innlandet Municipality (61°N, 11°E, Fig.
Weather statistics in representative locations to the trapping transect area (MET Norway, 2022).
Western endpoint |
High elevation point |
Eastern endpoint |
|
Elevation (m a.s.l.) |
500 |
1100 |
300 |
Weather station name |
Lillehammer - Nordsetervegen |
Sjusjøen - Storåsen |
Evenstad |
- Elevation (m a.s.l.) |
562 |
930 |
255 |
- Temperature (0C) |
4.2 |
2.1 |
4.0 |
- Mean daily precipitation (mm) |
2.3 |
2.9 |
NA |
Study area and the 23 trapping station locations (red circles) situated along the Birkebeiner Road. Each station contains a transect of 10 traps with fixed locations. The vegetation descriptions were taken close to the traps. The captures were further described and dissected at the University campus Evenstad (marked with a black dot).
Funding: This research was part of the BEcoDyn project supported by Hedmark University of Applied Sciences and a grant from the Norwegian Research Council (NFR project 221056) to H.P.A. Remaining funding from INN—Inland Norway University of Applied Sciences.
Study design: The Birkebeiner Road connects the two large valleys Gudbrandsdalen and Østerdalen from east to west over approximately 60 km (40 km straight line distance). The locations for the trapping stations were selected to obtain 100 m a.s.l. intervals between each station ranging from 300 m to 1,100 m a.s.l. (Fig.
In the initial setup for each trapping station, starting 10 m from the road, 10 metal snap traps (numbered 1-10, with trap 1 being closest to the road) were placed systematically 10 m apart along a transect at a right angle from the road. These trap locations were registered using handheld GPS devices (ca. 5 m accuracy), marked with coloured ribbons that were left out all year and their coordinates were reused the following years. The traps were placed in the understorey at the exact GPS location, however, slightly adjusted from 2022, when the traps were placed in the understorey in the most suitable location (i.e. close to holes, rock boulders, tree roots etc.) within one metre from the GPS location in order to maximise catches within the microsite.
Small mammal data: The trapping sessions consisted of five days of fieldwork. The trapping session was started by activating and baiting the traps with pieces of carrots mixed with peanut butter during the first morning. The three following mornings, all traps were checked and, if necessary, re-baited and/or re-activated. During these procedures, the trap’s status was noted (e.g. animal captured, broken trap etc., see a complete set of variables and definitions in the Data Resources section below in the DynamicProperties description in the Event dataset) and trapped animals were collected. On the last day of the session, traps were monitored as usual and retrieved from the field.
We carried out trapping sessions in autumn from years 2011 onwards and also in spring during the years 2011–2015. This translates into a total effort of 690 trap-nights per trapping session (see details in Table
Trapping history with number of total captures during trapping season. When we were unable to find a trap or it was broken, these were subtracted from the default number of 690 trap nights (i.e. default 230 traps over three nights).
Year |
Month |
Apodemus flavicollis |
Apodemus sylvaticus |
Lemmus lemmus |
Microtus agrestis |
Microtus oeconomus |
Microtus sp. |
Myodes glareolus |
Myodes rufocanus |
Myopus schisticolor |
Sorex sp. |
Unidentified |
Total captures |
Number of trap nights |
2011 |
June |
1 |
- |
2 |
1 |
1 |
- |
33 |
- |
1 |
- |
- |
39 |
690 |
2011 |
September |
- |
- |
- |
- |
- |
- |
38 |
6 |
- |
2 |
- |
46 |
689 |
2012 |
June |
1 |
- |
- |
- |
- |
- |
11 |
1 |
- |
2 |
- |
15 |
690 |
2012 |
September |
1 |
1 |
- |
- |
- |
- |
42 |
2 |
- |
9 |
- |
55 |
690 |
2013 |
June |
- |
- |
- |
4 |
- |
- |
21 |
1 |
- |
1 |
1 |
28 |
689 |
2013 |
September |
- |
1 |
- |
12 |
- |
- |
166 |
- |
- |
3 |
3 |
185 |
686 |
2014 |
June |
- |
- |
2 |
20 |
1 |
- |
92 |
- |
1 |
- |
4 |
120 |
688 |
2014 |
September |
- |
- |
1 |
13 |
2 |
- |
186 |
- |
- |
8 |
- |
210 |
682 |
2015 |
June |
- |
- |
- |
- |
- |
- |
7 |
- |
- |
- |
- |
7 |
690 |
2015 |
September |
- |
- |
- |
- |
- |
- |
11 |
- |
- |
1 |
- |
12 |
685 |
2016 |
September |
- |
- |
- |
1 |
- |
- |
47 |
- |
- |
4 |
- |
52 |
688 |
2017 |
September |
- |
- |
1 |
9 |
- |
- |
184 |
- |
- |
2 |
1 |
197 |
639 |
2018 |
September |
- |
- |
- |
2 |
- |
- |
137 |
- |
- |
5 |
- |
144 |
687 |
2019 |
September |
- |
- |
- |
- |
- |
- |
22 |
- |
- |
- |
- |
22 |
685 |
2020 |
September |
- |
4 |
- |
3 |
- |
- |
72 |
- |
- |
2 |
- |
81 |
677 |
2021 |
September |
- |
2 |
- |
23 |
- |
- |
92 |
- |
- |
4 |
3 |
124 |
690 |
2022 |
October |
- |
- |
- |
- |
- |
1 |
83 |
4 |
- |
6 |
- |
94 |
690 |
The collected animals were either brought into a laboratory immediately or frozen at -20oC until dissection. Here, the animals were examined further including dissection for reproductive trait measures (see a complete set of variables and their description in Table
The animals that were trapped were further analysed in the laboratory and several variables were measured. These measures are named with the prefix "anim" in Extendedmeasurementorfact dataset.
Variable |
Variable description |
MaturityOutside |
An age/maturity approximation of the animal, either adult, juvenile or unidentified based on cues on the outside of the animal (Variable type: text) |
BodyMass |
The body mass of the animal is given in grams. (Variable type: numeric) |
Tail |
The length of the tail in mm (Variable type: numeric) |
HeadWidth |
The width of the head/skull in mm (Variable type: numeric) |
BodyLength |
The length of the whole body including the tail in mm (Variable type: numeric) |
MaturityInside |
Maturity approximation based on immature females having a transparent uterus and mature females having a milky-white uterus (Variable type: text) |
LitterSize1 |
Placental scars were used to estimate litter size. First litter. Number of scars from the freshest litter (darkest scars) (Variable type: integer) |
LitterSize2 |
Placental scars were used to estimate litter size. Second litter. Number of scars of the next litter back in time (Variable type: integer) |
LitterSize3 |
Placental scars were used to estimate litter size. Third litter (Variable type: integer) |
LitterSizeSummed |
The total number of placental scars. Independent of litter (Variable type: integer) |
EmbryoCount |
Count of embryos, total (Variable type: integer) |
EmbryoLength |
Embryos were extracted from the body and measured in millimetres. Measured all and calculated average (Variable type: numeric) |
EmbryoResorption |
The number of embryo resorption. Small and less developed embryos are subject to resorption (Variable type: numeric) |
TestesVisibleOutside |
Visibly swollen testes on the outside prior to dissection (Present or absent) (Variable type: text) |
TestesLength |
Total length in mm of testes measured during dissection (Variable type: numeric) |
Tubili_epididimysPresent |
Tubili present in the epididymis or absent. The body next to the testes containing whitish coiled tube signifies maturity in males (Variable type: text) |
Tubili_epididimys |
Length of tubuli epididymis during dissection in mm (Variable type: numeric) |
ObserverLab |
An anonymised identifier of the observer in the lab (Variable type: integer) |
ObserverField |
An anonymised identifier of the observer during fieldwork (Variable type: integer) |
Vegetation data: Within a five-metre radius of each trap, we monitored the vegetation by describing the dominant habitat, tree layer, bush layer and field layer. We characterised these variables according to the descriptors given in Table
Vegetation measures performed during each trapping season. Here, the nearby surroundings of each trap were described using the following fixed variables. These measures are named with the prefix "min" in the Extendedmeasurementorfact dataset.
Dominant habitat |
Dominant tree layer |
Dominant shrub layer |
Dominant field layer |
Open |
Picea sp. |
Picea sp. |
Bryophytes |
Forest |
Pinus sp. |
Pinus sp. |
Dwarf shrubs |
Shrubs |
Deciduous |
Deciduous |
Graminoids |
- |
Juniperus sp. |
Juniperus sp. |
Lichens |
- |
None |
None |
Herbs |
- |
- |
- |
Bare ground |
Extended vegetation measures were performed in 2020 and 2021. Here, the nearby surroundings of each trap were described in more detail using the following fixed variables. These measures are named with the prefix "ext" in the Extended measurement or fact dataset.
Dominant habitat type |
Forest cutting class |
Cutting class description |
Field layer cover variables |
Field layer cover alternatives |
Forest |
0 |
0: impediment (non-productive forest) |
Bilberry |
absent |
Bog |
1 |
1: fresh clearcut, ready for planting and regrowth |
Cowberry |
seldom < 5% |
Shrub |
2 |
2: young forest before first thinning, trees up to 10-12 m |
Other heather |
frequent < 5% |
Alpine tundra |
3 |
3: young forest in thinning stage |
Grasses |
5-25% |
- |
4 |
4: forest ready to be harvested |
Herbs |
25-50% |
- |
5 |
5: old-growth forest |
Mosses |
50-75% |
- |
- |
- |
Lichens |
75-100% |
- |
- |
- |
Stones |
- |
- |
- |
- |
Old wood |
- |
- |
- |
- |
Bare ground |
- |
Data availability: The data are available on Dataverse (DOI: https://doi.org/10.18710/OOJYQ0) and consist of three datasets that can be joined using the variables eventID, occurrenceID or locationID. The data and R script to ease download and import (including producing Fig.
Quality control: We used standardised field forms to note observations which were followed by import to MS Excel (2011-2019 and 2021) and with predefined digital forms using KoboCollect (https://www.kobotoolbox.org/) from 2020 and onwards (with the exception of 2021) to reduce transcribing errors. The digital forms are available as .XML in the repositories and can be imported to KoboToolbox, ODK or similar services. Permits for trapping are given by The Norwegian Ministry of Climate and Environment.
Sources of error: Snap trapping provides only a relative density index. There are also local sources of error that potentially affect within and between-year values, such as: 1) trapping in various weather conditions affecting trapping success, 2) trap placement in more/less risky/suitable microhabitats, 3) trap placement in general could be an issue in spatio-temporal analysis, 4) molar teeth were not always checked on Microtus sp., thus there may be species level uncertainty between species identified as M. oeconomus and M. agrestis.
Description: Birkebeiner Road, Innlandet County, Norway.
61.460856 and 61.247073 Latitude; 11.023757 and 10.465131 Longitude.
Rank | Scientific Name | Common Name |
---|---|---|
kingdom | Animalia | Animal |
phylum | Chordata | |
subphylum | Vertebrata | |
class | Mammalia | |
order | Rodentia | |
order | Eulipotyphla | |
family | Cricetidae | |
family | Soricidae | |
family | Muridae | |
subfamily | Arvicolinae | |
genus | Apodemus | |
genus | Lemmus | |
genus | Microtus | |
genus | Myodes | |
genus | Myopus | |
genus | Sorex | |
species | Apodemus flavicollis | Yellow-necked mouse |
species | Apodemus sylvaticus | Wood mouse |
species | Lemmus lemmus | Norway lemming |
species | Microtus agrestis | Field vole |
species | Microtus oeconomus | Tundra vole |
species | Myodes glareolus | Bank vole |
species | Myodes rufocanus | Grey red-backed vole |
species | Myopus schisticolor | Wood lemming |
We monitored all trapping plots in the fall during the period from 07-06-2011 to 20-10-2022. During the years 2011-2015, we also performed a trapping session during the spring. The monitoring is planned to continue in the years ahead.
The dataset in the current work is licensed under a Creative Commons Attribution (CC-BY) 4.0 Licence.
A Darwin Core formatted file that describes an occurrence of an event, such as a trapping survey.
Column label | Column description |
---|---|
eventID | An identifier for the set of information associated with an Event. The values consist of the trapping station and the trap number separated by a T (Trap) and the date of the event. (Variable type: text) |
eventDate | The date which an Event occurred in the format 'YYYY-MM-DD'. (Variable type: text). |
locationID | An identifier for the set of Location information consisting of the trap station (1-23) and trap number (1-10) separated by T (Trap). (Variable type: text). |
verbatimCoordinates | The verbatim original spatial coordinates of the Location. (Variable type: text). |
verbatimCoordinateSystem | The spatial coordinate system for the verbatimCoordinates of the Location. (Variable type: text). |
verbatimSRS | The spatial reference system (SRS) upon which coordinates given in verbatimCoordinates are based. (Variable type: text). |
decimalLongitude | The geographic longitude (in decimal degrees). (Variable type: numeric). |
decimalLatitude | The geographic latitude (in decimal degrees). (Variable type: numeric). |
coordinateUncertaintyInMeters | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. (Variable type: numeric). |
geodeticDatum | The ellipsoid, geodetic datum or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude are based. (Variable type: text). |
dynamicProperties | A list of additional measurements, facts, characteristics or assertions about the record. The keys (i.e. TrapReleased, BaitPresent, Capture, TrapRetrieved, TrapMoved, TrapConditionOK) and values (i.e. Yes or No) are separated by colons and properties separated by commas for a data interchange format, such as JSON. (Variable type: text). |
minimumElevationInMeters | The lower limit of the range of elevation (altitude, usually above sea level), in metres. (Variable type: text). |
maximumElevationInMeters | The upper limit of the range of elevation (altitude, usually above sea level), in metres. (Variable type: text). |
A Darwin Core formatted file that describes the recorded instance of an organism at a particular time and place given in event.txt file. It includes information about the taxonomy and other relevant details. Further details on the trapped animals are given in the dataset Extendedmeasurementorfact and further described in Table
Column label | Column description |
---|---|
eventID | An identifier for the set of information associated with an Event. (Variable type: numeric). |
occurrenceID | An identifier for the Occurrence, here numbers in an ascending sequence from 1. (Variable type: text). |
scientificName | The full scientific name, with authorship and date information, if known. Includes the name in lowest level taxonomic rank that can be determined. (Variable type: text). |
taxonRank | The taxonomic rank of the most specific name in the scientificName. (Variable type: text). |
sex | The sex of the biological individual(s) represented in the Occurrence. (Variable type: text). |
A Darwin Core formatted file that contains additional measurements or facts about the occurrences that are not included in the core occurrence.txt file, e.g. vegetation measurements included. The variable measurementType is further described in Tables
Column label | Column description |
---|---|
measurementID | An unique identifier for the MeasurementOrFact here numbers in an ascending sequence from 1. (Variable type: text). |
eventID | If relevant, an identifier for the set of information associated with an Event. Join with event.txt to include additional details, such as coordinates. (Variable type: text). |
occurrenceID | If relevant, an identifier for the Occurrence. Join with occurrence.txt to include additional details, such as body mass of a trapped animal. (Variable type: text). |
locationID | If relevant, an identifier for the location that can be joined with event.txt. (Variable type: text). |
measurementDeterminedDate | The date on which the MeasurementOrFact was made. (Variable type: text). |
measurementType | The nature of the measurement, fact, characteristic or assertion. The vocabulary uses three types of prefixes: 'anim' for animal measures; and 'min' for minimum and 'ext' for extended habitat measures, the latter two separating the two methods used for describing the habitat associated with locationID. These are further described in Tables 3, 4 and 5, respectively. (Variable type: text). |
measurementValue | The value of the measurement, fact, characteristic or assertion. Values include text and numeric values depending on the MeasurementType, see Tables 4, 5. (Variable type: text). |
measurementUnit | The units associated with the measurementValue, for example, body mass is given in grams (g). (Variable type: text). |
We are grateful to all students for their help and commitment to field and lab work throughout the years and to Professor Morten Odden for his part in organising fieldwork in 2022. Thanks to Robert Mesibov for helpful comments on data formatting and Vidar Selås and Krizler Tanalgo for improvements on the manuscript. Most of all, we are grateful to Professor Harry P. Andreassen (1962-2019) for his kindness, mentorship and for spreading joy for science.
BZ, HPA and SP conceived the study and designed the scientific protocol; all authors led the student-orientated fieldwork, lab work and were involved in data management processes (each in different years); MN wrote the original manuscript, prepared figures and performed data curation; all authors contributed to the final manuscript.