Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Allan T. Souza (allan.souza@helsinki.fi), Martina I Ilarri (martinailarri@gmail.com)
Academic editor: Felipe Ottoni
Received: 05 Sep 2023 | Accepted: 23 Feb 2024 | Published: 08 Mar 2024
© 2024 Allan Souza, Martina Ilarri, Ester Dias, Mário Araújo, António Roleira, Ana Catarina Braga, Ana Rita Carvalho, Micaela Mota, Maria Helena Correia, Ana Lages, Ana Moura, Carlos Antunes
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Souza AT, Ilarri M, Dias E, Araújo M, Roleira A, Braga AC, Carvalho AR, Mota M, Correia MH, Lages A, Moura A, Antunes C (2024) Long-term monitoring of the fish community in the Minho Estuary (NW Iberian Peninsula). Biodiversity Data Journal 12: e112217. https://doi.org/10.3897/BDJ.12.e112217
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The paper presents an extensive fish sampling dataset spanning a long-term period from 2010 to 2019. The data were collected in Lenta Marina, an upstream area in the Minho Estuary of the NW Iberian Peninsula, which belongs to a LTSER (Long-Term Socio-Ecological Research) platform. To capture fish, fyke nets were utilised as the sampling method and deployed at Lenta Marina. This dataset offers valuable insights into the abundance of each collected taxa recorded over time.
The dataset reports a comprehensive compilation of data on the abundance of fish species observed in the area during the sampling period (includes zeroes when a given taxonomic entity was absent in a given sampling event). It provides a detailed record of the abundances of the fish community through time in a frequent sampling regime (on average, sampling was done every 6 days). The dataset shows that the amount of fish from invasive taxa exceeds the count of fish from native taxa in the Minho Estuary.
abundance, biodiversity, ecology, fyke nets, ichthyology
Estuarine ecosystems play an important role in maintaining fish biodiversity. They are highly biologically productive ecosystems that provide important feeding, spawning, refuge and nursery habitats for various fish species at different stages of development (
For over a decade, the ichthyofauna within the Minho Estuary, located in the north-western region of the Iberian Peninsula, has been subject to consistent monitoring (
The objective of this study was to document the sampling effort and the abundance and composition of the fish community (allowing the calculation of the CPUE - Catch Per Unit Effort) inhabiting the Minho Estuary between 2010 and 2019. The primary goal was to record the temporal changes that have occurred within the fish community through time.
The research was carried out in the LTSER-ESTUARIES - Portugal (https://deims.org/664177a4-a21a-4f59-9601-00909e275868), more especially at the Lenta Marina (
Spatial representation of the study area and sampling locations in the Minho Estuary. A) A map of the Iberian Peninsula, with an indication of the sampling location within the Minho Estuary. B) A zoomed-in view of the study area, highlighting the representative deployment locations of the fyke nets (white circles) inside the Lenta Marina.
This research was supported by national funds through FCT – Foundation for Science and Technology within the scope of UIDB/04423/2020 and UIDP/04423/2020. This work was partly carried out in the framework of the Migra Miño Minho project "Protection and conservation of migratory fish in the conservation of migratory fish in the international stretch of the River Minho and its tributaries", a project co-financed by the European Regional Development Fund (ERDF) through the Interreg V-A Programme, Spain through the Interreg V-A Programme, Spain-Portugal (POCTEP), 2014-2020
Fish samples were collected from January 2010 to November 2019. Fyke nets with a mesh size of 10 mm, a length of 7 m, a mouth diameter of 0.7 m and a central wing of 3.5 m were used to collect the fish (Fig.
Treemap showing the total number of individuals of the most representative species during the long-term monitoring. The area of each rectangle is proportional to the total abundance of the species in all samples collected and the yellow numbers in the bottom right corner indicate the total abundance per species. Red background colour refers to the invasive species, with the category others corresponding to the least abundant species in the group, in this case, representative of two species: Gobio lozanoi (n = 255) and Carassius auratus (n = 20). Blue background colour refers to the native species, with the category others corresponding to the least abundant species in the group, in this case, it is representative of eight species: Mugil cephalus (n = 167), Salmo trutta subsp. fario (n = 162), Dicentrarchus labrax (n = 100), Chelon auratus (n = 51), Chelon labrosus (n=28), Squalius carolitertii (n = 20), Petromyzon marinus (n = 12) and Alosa (n = 1).
Permission to collect fish within the study area was obtained in correspondence with the Portuguese Navy.
It is important to note that fyke netting is a passive gear and, therefore, considered a semi-quantitative method, which can be influenced by gear catchability and saturation, fish activity and behaviour, predation inside fyke nets, as well as environmental conditions (e.g. water temperature and transparecy) (
This study was carried out in Lenta Marina in the Minho Estuary in the north-west of the Iberian Peninsula.
41°57'15.9'' and 41°57'15.9'' Latitude; 8°44'42.5'' and 8°44'42.5'' Longitude.
The dataset comprised the records of 70,857 individuals belonging to 20 species, two subspecies and one genus (which has not been identified to the species level) taxa of fish from 12 families. The taxonomic list was defined, based on the presence of a taxonomic group in the entire dataset and the presence or absence of each taxonomic group in a eventID was recorded at occurrenceStatus. The taxon identification numbers (acceptedNameUsageID) were based on GBIF Backbone Taxonomy (
Rank | Scientific Name | Common Name |
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species | Petromyzon marinus Linnaeus, 1758 | Sea lamprey |
species | Anguilla anguilla (Linnaeus, 1758) | European eel |
genus | Alosa Linck, 1790 | Allis and twaite shads |
species | Cobitis paludica (de Buen, 1930) | Iberian loach |
species | Achondrostoma arcasii (Steindachner, 1866) | Panjorca |
species | Pseudochondrostoma duriense (Coelho, 1985) | Douro nase |
species | Squalius carolitertii (Doadrio, 1988) | Iberian chub |
subspecies | Salmo trutta subsp. fario Linnaeus, 1758 | Brown trout |
subspecies | Salmo trutta subsp. trutta | Sea trout |
species | Atherina boyeri Risso, 1810 | Sand smelt |
species | Chelon auratus (Risso, 1810) | Golden grey mullet |
species | Chelon labrosus (Risso, 1827) | Thicklip grey mullet |
species | Chelon ramada (Risso, 1827) | Thinlip grey mullet |
species | Mugil cephalus Linnaeus, 1758 | Flathead grey mullet |
species | Gasterosteus aculeatus Linnaeus, 1758 | Three-spined stickleback |
species | Dicentrarchus labrax (Linnaeus, 1758) | European seabass |
species | Platichthys flesus (Linnaeus, 1758) | European flounder |
species | Lepomis gibbosus (Linnaeus, 1758) | Pumpkinseed |
species | Micropterus salmoides (Lacepède, 1802) | Largemouth bass |
species | Tinca tinca (Linnaeus, 1758) | Tench |
species | Gobio lozanoi Doadrio & Madeira, 2004 | Iberian gudgeon |
species | Carassius auratus (Linnaeus, 1758) | Goldfish |
species | Cyprinus carpio Linnaeus, 1758 | Common carp |
Sampling was performed on average every 6 days (5.7 ± 3.6) throught the study period, from January 2010 to November 2019. The interval between events was not constant and gaps of some days occurred, averaging 1.9 ± 3.5 (mean ± SD) days, with a minumum of 0 and a maximum of 34 days (Fig.
CC BY 4.0
The dataset contains data from fyke nets deployed in the Minho Estuary (Portugal) from 2010 to 2019. The sampling frequency varied but, on average, data were collected using up to five different fyke nets. However, due to technical issues, the sampling pattern was not constant, with some fyke nets staying underwater for shorter or longer periods and occasionally having a variable number of fyke nets per event. The dataset includes 34 terms that follow Darwin Core standard (
Column label | Column description |
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parentEventID | An identifier for the broader dwc:Event that groups this and potentially other dwc:Events. |
eventID | An identifier for the set of information associated with an Event (something that occurs at a place and time). May be a global unique identifier or an identifier specific to the dataset. |
eventDate | The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. |
year | The four-digit year in which the dwc:Event occurred, according to the Common Era Calendar. |
startDayOfYear | The earliest integer day of the year on which the dwc:Event occurred (1 for January 1, 365 for December 31, except in a leap year, in which case it is 366). |
endDayOfYear | The latest integer day of the year on which the dwc:Event occurred (1 for January 1, 365 for December 31, except in a leap year, in which case it is 366). |
country | The name of the country or major administrative unit in which the dcterms:Location occurs. |
countryCode | The standard code for the country in which the dcterms:Location occurs. |
geodeticDatum | The ellipsoid, geodetic datum or spatial reference system (SRS) upon which the geographic coordinates given in dwc:decimalLatitude and dwc:decimalLongitude are based. |
decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |
coordinateUncertaintyInMeters | The horizontal distance (in meters) from the given dwc:decimalLatitude and dwc:decimalLongitude describing the smallest circle containing the whole of the dcterms:Location. Leave the value empty if the uncertainty is unknown, cannot be estimated or is not applicable (because there are no coordinates). |
DEIMS.iD | Unique alpha-numeric identifier of the site. The DEIMS-ID is automatically generated by DEIMS-SDR and adds the deims.org url as a prefix. |
habitat | A category or description of the habitat in which the Event occurred. |
basisOfRecord | The specific nature of the data record. |
samplingProtocol | The names of, references to, or descriptions of the methods or protocols used during an Event. |
sampleSizeValue | A numeric value for a measurement of the size (time duration, length, area or volume) of a sample in a sampling event. |
sampleSizeUnit | The unit of measurement of the size (time duration, length, area or volume) of a sample in a sampling event. |
samplingEffort | The amount of effort expended during a dwc:Event. |
occurrenceStatus | A statement about the presence or absence of a dwc:Taxon at a dcterms:Location. |
occurrenceID | An identifier for the dwc:Occurrence (as opposed to a particular digital record of the dwc:Occurrence). In the absence of a persistent global unique identifier, construct one from a combination of identifiers in the record that will most closely make the dwc:occurrenceID globally unique. |
organismQuantity | A number or enumeration value for the quantity of organisms. |
organismQuantityType | The type of quantification system used for the quantity of organisms. |
degreeOfEstablishment | The degree to which an Organism survives, reproduces and expands its range at the given place and time. |
vernacularName | A common or vernacular name. |
scientificName | The full scientific name, with authorship and date information, if known. When forming part of an Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the IdentificationQualifier term. |
acceptedNameUsageID | An identifier for the name usage (documented meaning of the name according to a source) of the currently valid (zoological) or accepted (botanical) taxon. |
taxonRank | The taxonomic rank of the most specific name in the scientificName. |
kingdom | The full scientific name of the kingdom in which the taxon is classified. |
phylum | The full scientific name of the phylum or division in which the taxon is classified. |
order | The full scientific name of the order in which the taxon is classified. |
family | The full scientific name of the family in which the taxon is classified. |
genus | The full scientific name of the genus in which the taxon is classified. |
scientificNameAuthorship | The authorship information for the scientificName formatted according to the conventions of the applicable nomenclaturalCode. |
All sampling procedures were conducted in accordance with the European Directive 2010/63/EU on the protection of animals used for scientific purposes and its transposition into Portuguese law, "Decreto Lei" 113/2013.
The authors would like to thank Eduardo Martins, Diogo Novais, Patrício Bouça and Mafalda Fernandes for their collaboration in the fieldwork. ED and MII acknowledge support from FCT through the Strategic Funding to CIIMAR (UIDB/04423/2020 and UIDP/04423/2020) and research contracts to ED (DL57/2016/CP1344/CT0021) and MII (DL57/2016/CP1344/CT0018). This study has received funding from the European Union's Horizon Europe Research and Innovation Programme under grant agreement No 101057437 (BioDT project, https://doi.org/10.3030/101057437). Views and opinions expressed are those of the author(s) only and do not necessarily reflect those of the European Union or the European Commission. Neither the European Union nor the European Commission can be held responsible for them. This project has received funding from the European Union's Horizon 2020 Research and Innovation Programme under grant agreement No 871128 (eLTER PLUS). Open access funded by Helsinki University Library.
The authors have contributed to this data paper according to the following CRediT statements.
Conceptualisation: CA
Data curation: ATS, MII
Formal analysis: ATS, MII
Funding acquisition: CA
Investigation: ACB, AL, AM, AR, ARC, CA, MJA, MHC, MM
Methodology: CA
Project administration: CA
Resources: CA
Software: ATS, MII
Supervision: CA
Validation: ATS, MII
Visualisation: ATS, MII
Writing - original draft: ATS, MII
Writing - review & editing: ATS, CA, ED, MII