Biodiversity Data Journal :
Software Description
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Corresponding author: Booppa Petcharad (ponksee.b@gmail.com)
Academic editor: Jeremy Miller
Received: 04 Jan 2024 | Accepted: 11 Apr 2024 | Published: 29 Apr 2024
© 2024 Booppa Petcharad, Thanakron Into, Sasiporn Tongman, Niwan Wattanakitrungroj, Nutthaphol Dechpramualphol, Supet Jirakajohnkool, Tadsanai Jeenthong
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Petcharad B, Into T, Tongman S, Wattanakitrungroj N, Dechpramualphol N, Jirakajohnkool S, Jeenthong T (2024) Spiders in Thailand (SIT) via spiderthailand.info: Thailand spider data retrieval system for geographical occurrence and photographic identification. Biodiversity Data Journal 12: e118262. https://doi.org/10.3897/BDJ.12.e118262
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High biodiversity in the tropics is good for ecosystem services; however, challenges in taxonomy and identification usually come from such high biodiversity. Spiders are no exception to the challenges. Identifying spiders in tropical places like Thailand is difficult and time consuming. To reduce the difficulty of identifying Thai spiders, a data retrieval system for geographical occurrence and photographic identification was conducted to deploy on an online platform, Spiders in Thailand (SIT) via the website “spiderthailand.info”. This allows professional arachnologists and amateur spider lovers to visit and check the geographical distribution of Thai spiders and to quickly access pictures for comparative photographic identification. To facilitate Thai spider identification, there were two parts, the database and the website, which are connected to each other. Data of Thai spiders were extracted from the World Spider Catalog to build a database comprising geographical occurrence and pictures of spider species in Thailand. The database was then linked with the website to display data.
The dataset of pictures and illustrations extracted from taxonomic literature of the World Spider Catalog were included in the database for connecting with the online platform, Spiders in Thailand (SIT) via the website “spiderthailand.info” which facilitated access to pictures and illustrations, expediting the identification of Thai spider specimens. Geographical occurrences of Thai spiders consisted of 1419 records belonging to 670 species of 228 genera and 50 families. Amongst those, 461 species from 133 genera of 41 families were distributed only in Thailand. Around Thailand, 756 geographical localities were reported for spider occurrences. From 76 provinces and one additional special administrative area (Bangkok), 58 provinces showed occurrence records of spiders and 18 provinces showed non-occurrence records. Those provinces of non-occurrence records of spiders were Amnat Charoen, Ang Thong, Bueng Kan, Chai Nat, Maha Sarakham, Mukdahan, Nakhon Phanom, Nong Bua Lam Phu, Nonthaburi, Phayao, Phichit, Phra Nakhon Si Ayutthaya, Samut Prakan, Samut Sakhon, Si Sa Ket, Sing Buri, Uthai Thani and Yasothon. Most spiders were reported from Chiang Mai Province.
arthropod, arachnid, website, online platform, spider distribution, lists of species, Southeast Asia
Spiders are a group of animals which are highly diverse in several aspects amongst terrestrial invertebrates (
Our study aimed to aggregate occurrences of spiders in Thailand that were mainly reported in taxonomic literature.
Data resources and integrations: In the first step, the daily updated csv file storing worldwide spider records was downloaded from World Spider Catalog: WSC (https://wsc.nmbe.ch/dataresources) on 9 September 2020 which contained spiders’ information for almost 50,000 species (
The infrastructure of spiderthailand.info is based on a MongoDB database, which is a NoSQL database. It does not use the traditional relational database model. However, MongoDB stores data in documents similar to JSON objects. In this way, it makes MongoDB very flexible and scalable, because documents can contain any type of data and can be nested to any depth. The website of spiderthailand.info does not provide standardised APIs. Instead, it offers a web application written in JavaScript language using NextJs for experts’ data submission and a web portal for everyone’s read-only data public access. Additionally, the website of spiderthailand.info contains geospatial features. This allows us to not only query each spider species, i.e. based on their names in Thailand, but also search a specific district or province for spatial data visualisation.
This work was supported by the Thailand Science Research and Innovation Fundamental Fund fiscal year 2023.
Data attribute description:
Spider species’ occurrence data were represented by multiple attributes as explained in Table
Field Name |
Data Type |
Description |
---|---|---|
_id |
object Id |
ID of the spider. |
spider_uuid |
string |
Unique ID of the spider. |
family |
string |
Family of the spider. |
genus |
string |
Genus of the spider. |
species |
string |
Name of the spider. |
author |
string |
Author of publications who firstly discovered the species. |
publish_year |
string |
Year of publications about the species for the first time. |
country |
string |
Thailand, as the first country to report spider occurrences. |
country_other |
string |
Other countries reported spider occurrences. |
altitude |
string |
The vertical distance of spider occurrences reported. |
method |
string |
Procedure of spider occurrences reported. |
habitat |
string |
Living areas of spider occurrences reported. |
microhabitat |
string |
Sub-living areas of spider occurrences reported. |
designate |
string |
Origin of spider’s species name. |
status |
string |
State of data completion. |
address[] |
array of object |
Nested data array stored area positions and names of spider occurrences reported. |
address[].province |
string |
Province name. |
address[].district |
string |
District name. |
address[].locality |
string |
Location name of spider occurrences reported. |
address[].position[] |
array of object |
Position of spider occurrences reported. |
address[].position[].name |
string |
Name of each position. |
address[].position[].latitude |
float64 |
Latitude of a position. |
address[].position[].longitude |
float64 |
Longitude of a position. |
image_file[] |
array of string |
Image file names. |
paper[] |
array of string |
References to papers related to the occurrences. |
create_at |
date_time |
Data and time of the first created record. |
update_at |
date_time |
Data and time of the latest data modification. |
created_by |
string |
User who submitted data. |
Example of one spider species, Heliconilla oblonga and its data stored in the spiderthailand.info database. Diagram was created by using https://plantuml.com.
Usage description:
Users can always see the current total numbers of spider species found in Thailand on the main page (Fig.
Front page of https://spiderthailand.info (on the left) and family list page (on the right).
This work was supported by the Thailand Science Research and Innovation Fundamental Fund fiscal year 2023 (TSRI: FF2023), Thammasat University. We express our heartfelt thanks to supporting staff of Thammasat University who dedicated time for coordinating between Thammasat University and National Research Council of Thailand for TSRI: FF2023. We thank Akio Tanikawa for comments on the draft manuscript. Some part of this work was one of learning outcomes from Biotechnological Araneology (BT415), an elective course in semester 2 of academic year 2022 in Bachelor of Science (Biotechnology), Thammasat University. We thank all colleagues of the Department of Biotechnology and academic team of Thammasat University for supporting the creation of the BT415. We really appreciate Jeremy Miller, the subject editor and Francisco Andres Rivera-Quiroz, the reviewer and the anonymous reviewer for careful reading of this manuscript and all insightful comments and suggestions. We thank Mike Skinner for recommendation and writing correction. We deeply appreciate Michael Cota for linguistic editing and very quick response.