Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Marco Grillo (grillomarco94@gmail.com)
Academic editor: Huw Griffiths
Received: 26 Jan 2024 | Accepted: 28 Feb 2024 | Published: 11 Mar 2024
© 2024 Marco Grillo, Guido Bonello, Matteo Cecchetto, Alice Guzzi, Nicholas Noli, Valentina Cometti, Stefano Schiaparelli
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Grillo M, Bonello G, Cecchetto M, Guzzi A, Noli N, Cometti V, Schiaparelli S (2024) Planktonic, benthic and sympagic copepods collected from the desalination unit of Mario Zucchelli Research Station in Terra Nova Bay (Ross Sea, Antarctica). Biodiversity Data Journal 12: e119633. https://doi.org/10.3897/BDJ.12.e119633
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Distributional data on planktonic, benthic and sympagic copepods collected in the framework of the XXXIVth Expeditions of the Italian National Antarctic Programme (PNRA) to the Ross Sea sector from 2018–2019 are here provided. These occurrences correspond to specimens collected from the 25 μm filters used in the desalination plant of the Italian research station "Mario Zucchelli" (MZS), located in the Terra Nova Bay area (TNB; Ross Sea, Antarctica). This dataset is a contribution to the Antarctic Biodiversity Portal, the thematic Antarctic node for both the Ocean Biogeographic Information System (AntOBIS) and the Global Biodiversity Information Facility Antarctic Biodiversity Information Facility (ANTABIF). The dataset was uploaded and integrated with the SCAR-AntOBIS database (the geospatial component of SCAR-MarBIN). Please follow the guidelines from the SCAR Data Policy (ISSN 1998-0337) when using the data. If you have any questions regarding this dataset, please contact us via the contact information provided in the metadata or via data-biodiversity-aq@naturalsciences.be. Issues with the dataset can be reported at the biodiversity-aq GitHub project.
We describe the diversity of marine copepods Terra Nova Bay sampled by the filters installed in the desalination unit (DU) of the Italian research station "Mario Zucchelli" described in recent work. The opening of the intake pipe of the DU is positioned at a depth of 4 m and allowed a total of 2,116 specimens to be sampled and recognised. In addition, new occurrence records of copepod genera and species are reported in the same zone. We provide an overview of the marine copepod diversity reported for TNB. The total of 2,116 individuals corresponds to 14 genera and 15 species and is represented by 136 occurrence records in this dataset. Around 52% of the total number of species are new records for the TNB area. The publication of this data paper was funded by the Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS) in the Framework of EU-Lifewatch as a contribution to the SCAR Antarctic biodiversity portal (biodiversity.aq).
Terra Nova Bay, Ross Sea, Museum collection, coastal ecosystem
Copepoda are a major component of zooplankton assemblages and are a fundamental class in marine food webs, representing 70% of the mesozooplankton biomass (
Copepod communities are important in trophodynamic terms for secondary production and the grazing effect (
Their reaction to changes in environmental conditions (e.g. modifications in water column stratification and water acidification (
Copepod communities in the Ross Sea area have been extensively studied since 1985 and were part of the objectives of the first Italian Ocenographic Expeditions of the PNRA (
In
Previous MNA contributions focused on Mollusca, Tanaidacea, Fungi, Ophiuroidea, Porifera, Bryozoa, Rotifera, Asteroidea and Copepoda (
Planktonic, benthic and sympagic copepods collected in the desalination unit during the XXXIVth Expedition of the Italian National Antarctic Program (PNRA).
Grillo Marco, Bonello Guido, Cecchetto Matteo, Guzzi Alice, Noli Nicholas, Cometti Valentina, Schiaparelli Stefano.
The distributional data of the copepods studied in this data paper derives from the XXXIVth PNRA Antarctic expedition (Fig.
Data originated in the framework of the PNRA XXXIVth Antarctic Expeditions (2018–2019) within the PNRA-funded research projects ”TNB-CODE" - Barcoding e metabarcoding di organismi Antartici marini, terrestri e limnetici”. Mario Zucchelli Station (Project code PNRA 2016/AZ1.17; PI Prof. Schiaparelli S.) and "RosS-MODe“ - Ross Sea biodiversity Monitoring through barcoding, metabarcODing and e-DNA” (Project code PNRA 18_00078; PI Prof. Ficetola F.).
The Italian National Antarctic Museum (MNA) hired two experts, G. Bonello and M. Grillo, with research contracts #2993 and #2992 issued on 25 June 2019, to analyse and identify to the lowest possible taxonomic resolution which the specimens represent in the samples.
The publication of this data paper was funded by the Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS) in the Framework of EU-Lifewatch as a contribution to the SCAR Antarctic biodiversity portal .
Samples were collected using the DU plant of MZS (Fig.
All records were validated. Coordinates were converted into decimal latitude and decimal longitude and plotted to verify the geographical location and locality. All scientific names were checked for typos and matched to the species information backbone of Worlds Register of Marine Species and AphiaID was assigned to each taxon as scientificNameID. The event date and time were converted into ISO 8601 and verified with the field reports.
The 25 μm mesh size filters are replaced by the DU plant’s technician as soon as the pressure inside the filter housing reaches warning levels to prevent the clogging of the system. After removing the filters from their respective housings, the same were transported to the laboratory and processed following
The collected copepods were counted and identified at the lowest possible level by GB and MG, based on morphological examination and by considering historic and recent bibliography (e.g.
The original unsorted plankton matrix is stored in 96% ethanol and refrigerated at −20°C. The copepod specimens, split, sorted and identified, are in 96% ethanol or fixed on a slide and permanently deposited in the biological collection of the MNA with a specific MNA voucher number (from MNA-13263 to MNA-13174, from MNA-13276 to MNA-13278, from MNA-13743 to MNA-13748, MNA-13754, from MNA-13764 to MNA-13768, from MNA-15192 to 15197, from MNA-15199 to MNA-15250, MNA-15252, MNA-15253, MNA-15624 and MNA-15625). Antarctic copepod distribution data have been uploaded to the GBIF portal.
A metabarcoding methodology was also applied to the DU plant’s filters and only some preliminary and qualitative results are here reported. Specifically, the relative abundance of 18S rRNA sequences identified by the taxonomic identification of the metabarcoding protocol as copepods with respect to the total number of sequences is here reported only to illustrate the temporal dynamics that could be discerned by the metabarcoding approach during the sampling period (Fig.
Samples were collected at one location, the Italian “Mario Zucchelli” research station (MZS) in Terra Nova Bay (TNB) (Ross Sea, Antarctica) (Fig.
Coordinates of desalination unit: −74.693° latitude; 164.118° longitude.
The Copepoda diversity of the dataset is displayed in a total of 167 MNA vouchers (comprising vials with single species isolated from bulk samples and glass slides with dissected or whole specimens) collected during nine different sampling days (i.e. when filters have been changed). A total of 2,116 individuals were obtained, with Harpacticoida representing the most frequent order (52.1%), followed by Calanoida (44.3%) and Cyclopida (3.6%).
Copepod species sampled via the DU consist of 14 families (Fig.
The most frequent families were Acartiidae (30.53%), Dactylopusiidae (24.55%) and Tisbidae (14.37%), while less frequent families have been Calanidae (7.18%), Harpacticidae (5.38%), Stephidae (4.79%), Ameiridae (2.40%), Hemicyclopinidae (2.40%), Ancorabolidae (1.80%), Metridinidae (1.80%), Peltidiidae (1.80%), Oithonidae (1.20%), Laophontidae (0.60%) and Scolecitrichidae (0.60%) and undefined (0.60%) (Fig.
Regarding the life stages of the specimens, the dataset is composed of a majority of adults (94%), followed by the copepodite stages (6%).
From the literature review, the copepods found inside the DU samples can, generally, be assigned to the following habitats: benthos (47.90%), ice (35.33%), plankton (10.78%), benthos/ice (5.39%); the remaining 0.6% could not be assessed and are reported as unidentified. Fig.
Rank | Scientific Name |
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kingdom | Animalia |
phylum | Arthropoda |
class | Maxillopoda |
order | Calanoida |
order | Cyclopoida |
order | Harpacticoida |
family | Acartiidae |
family | Ameiridae |
family | Ancorabolidae |
family | Calanidae |
family | Dactylopusiidae |
family | Harpacticidae |
family | Hemicyclopinidae |
family | Laophontidae |
family | Metridinidae |
family | Oithonidae |
family | Oncaeidae |
family | Peltidiidae |
family | Scolecitrichidae |
family | Stephidae |
family | Tisbidae |
genus | Alteutha Baird, 1846 * |
genus | Ameira Boeck, 1865* |
genus | Calanoides Brady, 1883 |
genus | Calanus Leach, 1816 |
genus | Dactylopusia Norman, 1903* |
genus | Harpacticus Milne Edwards H., 1840 |
genus | Laophonte Philippi, 1840 |
genus | Laophontodes Scott T., 1894* |
genus | Lophotrix Giesbrecht, 1895* |
genus | Metridia Boek, 1865 |
genus | Oithona Braird, 1843 |
genus | Paradactylopodia Lang, 1944 |
genus | Paralabidocera Wolfenden, 1908 |
genus | Pseudocyclopina Lang, 1946* |
genus | Stephos Scott T., 1892 |
genus | Tisbe Lilljeborg, 1853 |
species | Alteutha depressa (Bairf, 1837)* |
species | Calanoides acutus (Giesbrecht, 1902) |
species | Calanus propinquus Brady, 1883 |
species | Dactypusia tisboides (Claus, 1863)* |
species | Harpacticus furcifer Giesbrecht, 1902 |
species | Laophonte glacialis Brady, 1910 |
species | Laophontodes typicus Scott T., 1894* |
species | Metridia gerlachei Giesbrecht, 1902 |
species | Oithona similis Claus, 1866 |
species | Paradactylopodia brevicornis (Claus, 1866)* |
species | Paralabidocera antarctica (Thompson I.C., 1898) |
species | Pseudocyclopina berndtreyi Elwers, Martínez Arbizu & Fiers, 2001* |
species | Stephos longipes Giesbrecht, 1902 |
species | Tisbe gracilipes Scott T., 1912 |
29 December 2018 to 02 February 2019.
The dataset was published under the licence CC-BY 4.0.
This dataset is built on information from the copepod specimens analysed in this work. The aims and objectives of the XXXIVth PNRA can be found in the related campaign report (
Column label | Column description |
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occurrenceID | A global unique identifier for the Occurrence (as opposed to a particular digital record of the occurrence). |
institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. |
instituitonID | An identifier for the institution having custody of the object(s) or information referred to in the record. |
collectionCode | The name, acronym, coden or initialism identifying the collection or dataset from which the record was derived (as shown on the Global Registry of Scientific Collections). |
collectionID | An identifier for the collection or dataset from which the record was derived. |
catalogNumber | An identifier of any form assigned by the source within a physical collection or digital dataset for the record which may not be unique, but should be fairly unique in combination with the institution and collection code. |
basisOfRecord | The specific nature of the data record and is here always reported as “PreservedSpecimen”. |
type | Defines the nature of the resource, here is always “PhysicalObject”. |
scientificName | The identification at the lowest taxonomic rank, without authorship information. |
TaxonRank | The taxonomic rank of the most specific name in the scientificName. |
kingdom | The full scientific name of the kingdom in which the taxon is classified. |
phylum | The full scientific name of the phylum in which the taxon is classified. |
class | The full scientific name of the class in which the taxon is classified. |
order | The full scientific name of the order in which the taxon is classified. |
family | The full scientific name of the family in which the taxon is classified. |
genus | The full scientific name of the genus in which the taxon is classified. |
specificEpithet | The name of the first or species epithet of the scientificName. |
scientificNameAuthorship | The authorship information for the scientificName formatted according to the conventions of the applicable. |
identificationQualifier | Abrief phrase or a standard term (sp., spp.) to express the determiner's doubts about the Identification. |
scientificNameID | The globally unique identifier for the taxonomic information related to the scientificName and stored in WoRMS, the AphiaID. |
individualCount | The number of individuals present. |
sex | The sex of the identified specimens. |
lifeStage | The life stage of organisms. In detail: CI: copepodite I, CII: copepodite II, CIII: copepodite III, CIV: copepodite IV; CV: copepodite V. |
occurrenceRemarks | Campaign in which the organisms were sampled. |
eventDate | Date the organisms were sampled. |
year | Sampling year. |
month | Sampling month. |
day | Sampling day. |
eventID | Unique code with data relating to the campaign and sampling date. |
decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum). |
decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum). |
geodedicDatum | Spatial reference system (WGS84) upon which the geographic coordinates given in decimalLatitude and decimalLongitude are based. |
minimumDepthInMetres | Minimum sampling depth during event in metres. |
maximumDepthInMetres | Maximum sampling depth during event in metres. |
samplingProtocol | Gear used to collect specimens and relative DOI of manuscript in which the sampling method is described. |
eventRemarks | Filter number of the desalinisation unit plants. |
preparations | Alist of preparations and preservation methods for a specimen. In detail: whole organism (96% ethanol), whole organism (slide fixed in glycerol) and dissected organism (slide fixed in glycerol). |
taxonRemarks | Remarks on taxa, in this case, which ecological category the analysed species occupy. |
coordinateUncertaintyInMetres | Horizontal distance, measured in metres, between the given decimal latitude and decimal longitude represents the radius of the minimum circle that includes the entire area. |
occurrenceStatus | Astatement about the presence or absence of a specimen. |
continet | Continent where the organisms were sampled. |
countryCode | The standard code for the country where the organisms were sampled. |
recordedBy | Surname and name of the personnel who collected the samples. |
recordedByID | ORCID of the personnel who collected the samples. |
identifiedBy | Surname and name of the personnel who analysed and recognised the single species. |
identifiedByID | ORCID of the personnel who analysed and recognised the single species. |
coordinatePrecision | A decimal representation of the precision of the coordinates given in the decimalLatitude and decimalLongitude. |
This paper is an Italian National Antarctic Programme (PNRA) contribution to the CCAMLR CONSERVATION MEASURE 91-05 (2016) for the Ross Sea region Marine Protected Area, specifically addressing the priorities of Annex 91-05/C. The National Antarctic Museum is acknowledged for research contracts #2992 and #2993 with Dr. G. Bonello and M. Grillo. The PNRA project “TNB-CODE” (“Terra Nova Bay barCODing and mEtabarcoding of Antarctic organisms from marine and limno-terrestrial environments”, PNRA 16_00120, PI: S. Schiaparelli) is acknowledged for the molecular data shown in Fig. 3. The publication of this data paper was funded by the Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS) in the Framework of EU-Lifewatch as a contribution to the SCAR Antarctic biodiversity portal (biodiversity.aq). We are indebted to Dr. Anton Van De Putte and Dr. Yi Ming Gan for their much-appreciated advice on metadata standards and the Darwin core archive format. We thank anonymous reviewers for their precious suggestions and comments that improved the initial manuscript version.
Conceptualisation, G.M., B.G. and S.S.; methodology, G.M., B.G. and S.S.; formal analysis, G.M. and B.G.; resources, G.M. and B.G.; data acquisition G.M., B.G.; data curation, G.M. and S.S.; writing—original draft preparation, G.M.; writing—review and editing, G.M., B.G., C.M., G.A., N.N., C.V. and S.S.; funding acquisition, S.S. All authors have read and agreed to the published version of the manuscript.