Biodiversity Data Journal :
Short Communication
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Corresponding author: Elena Valsecchi (elena.valsecchi@unimib.it)
Academic editor: Hanieh Saeedi
Received: 03 Feb 2024 | Accepted: 24 May 2024 | Published: 05 Jun 2024
© 2024 Elena Valsecchi, Alessandro Gabbiadini
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Valsecchi E, Gabbiadini A (2024) An Observatory to monitor range extension of the Mediterranean monk seal based on its eDNA traces: collecting data and delivering results in the “Open Science” era. Biodiversity Data Journal 12: e120201. https://doi.org/10.3897/BDJ.12.e120201
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The monk seal is the most endangered pinniped in the world and the only one found in the Mediterranean, where its distribution and abundance have suffered a drastic decline in the last few decades. Data on its status are scattered due to both its rarity and evasiveness and records are biased towards occasional, mostly coastal encounters. Nowadays, molecular techniques allow us to detect and quantify minute amounts of DNA traces released into the environment (eDNA) by any organism. A species-specific molecular assay is now available for detecting the recent presence of the monk seal in the water column through the analysis of sea-water samples collected from the sea surface. The project “Spot the Monk” uses this non-invasive detection tool to monitor monk seal occurrence in Mediterranean waters by means of eDNA analysis. The simplicity in the acquisition of samples together with the need to collect samples in multiple points simultaneously made the project well suited to the involvement of the general public. Up to today, about 350 samples have been collected and analysed in the central-western Mediterranean by researchers and a multifarious range of citizen scientists - from recreational sailing organisations, both amateur and competitive sportsmen, to fishermen. This work announces the launch of an open-source Observatory (https://www.spot-the-monk-observatory.com/) where the project outcomes are publicly accessible as soon as they are produced. Embracing the principles of Open Science, we believe that such an approach can contribute to filling the knowledge gap about the distribution of this charismatic species in our seas, providing, at the same time, a proof of concept on how data collected by a variety of actors can be returned to the scientific and non-scientific communities in an innovative format for immediate consultation.
barcoding, qPCR, single-species assay, citizen science, molecular monitoring, environmental DNA
Since the beginning of the new millennium, each field of Science has undergone exponential growth, following the surge in the development of new technologies, an increasingly larger scientific community involved in research and the help and exploitation of artificial intelligence (AI), leading to the beginning of the era of big data. In the field of molecular ecology, the revolutionary breakthrough has been acquired through technological competence to "read" the DNA that each living organism releases into the environment in which it lives (eDNA). These techniques are becoming so sensitive that they allow for the identification of infinitesimal traces of a specific target species’ eDNA, even if this is rare and difficult to observe. In parallel with technological development, there is a emergent awareness that there is an entire world to be sampled, sequenced and analysed so that it may be better understood and safeguarded. Not only, the general public can play a key role in this process (Citizen Science). Definitely a new era for Science.
The Mediterranean Monk Seal, Monachus monachus (Hermann 1779), is the only pinniped endemic to the Mediterranean Sea. This species is currently listed as vulnerable according to The International Union for Conservation of Nature (IUCN) Red List (
Spot the Monk, (StM,) is an initiative born in 2019, after the molecular identification system for the Mediterranean monk seal was developed and validated. Since then, StM has been continuously expanding and developing. Not only were several scientific or Citizen-Science associations involved in the sampling, but also some Marine Protected Areas and parallel scientific projects flanked the venture. A series of progressive BioBlitzes is currently underway (sampling every 6 weeks, throughout the year). To cope with the drastic increase in data (which will more than double in 2024), it was necessary to create a platform where all results were simultaneously viewable.
The project is constantly developing and growing. The next steps concern the implementation of the molecular methodology (e.g. updating the assay with more sensitive approaches, for example, ddPCR), the integration of the Observatory in global data aggregators, such as the European Marine Observation and Data Network (EMODnet) and the Open Science Framework (https://osf.io/) and the enlargement of the sampling area (e.g. including the North African coast).
The Observatory (Fig.
Although the fate and persistence of eDNA in the aquatic environment is still not fully understood, since it depends also on the source organism (dimensions, habits and habitats) and the biological material from where it originates (e.g. sloughed skin, faeces etc.), as well as being affected by many biotic (e.g. entering the food web) and abiotic (e.g. UV, currents) factors (
Trace detectability is tightly associated with signal dispersal, as biological traces move with currents, tend to disperse and, thus, become diluted along with the time since they were shed into the water column. For this reason, the concentration of the signal can give insights into the freshness of the trace. The concentration is, in turn, proportional to the number of experimental replicates (out of nine according to the Spot the Monk protocol,
The Observatory is intended as a forum where professional and amateur expertise meets, carries forward data and information that provide a feedback loop for all stakeholders to advance and develop a collaborative approach to explore new pathways, in alignment with the new EU research specification (https://research-and-innovation.ec.europa.eu/strategy_en).
There are far too many people and associations, those who have supported the Spot the Monk project since 2018, allowing the collection of over 400 samples, to be mentioned individually here. They are all mentioned and thanked in the Acknowledgement page of the Observatory website (www.spot-the-monk-observatory.com). However, a special thank goes to Gruppo Foca Monaca that has supported Spot the Monk from the very beginning, in all the stages of development. Its president, the documentarist Emanuele Coppola, provided most of the monk seal pictures shown in the Observatory site. Our gratitude goes also to Paolo Galli, director of the MaRHE Center, for believing in the creation of the Observatory. We thank Dr Joana Pauperio and another anonymous referee for the valuable comments. Finally, we thank the BiCIKL project (Grant No 101007492) for inspiring the submission of this manuscript.
EV developed the species-specific molecular assay, is the creator of Spot the Monk project and conceived the idea of making its data broadly available. AG developed the website UI and integrated the services with OpenStreetMap's API for data visualization.