Biodiversity Data Journal :
Taxonomy & Inventories
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Corresponding author: Joong-Ki Park (jkpark@ewha.ac.kr)
Academic editor: Fabio Crocetta
Received: 12 Aug 2024 | Accepted: 15 Oct 2024 | Published: 23 Oct 2024
© 2024 Jina Park, Yukyung Kim, Eggy Triana Putri, Joong-Ki Park
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Park J, Kim Y, Putri ET, Park J-K (2024) Revisiting the taxonomy of Korean Ischnochiton species (Polyplacophora, Ischnochitonidae) based on a combined analysis of morphological and molecular data. Biodiversity Data Journal 12: e134521. https://doi.org/10.3897/BDJ.12.e134521
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Chiton species belonging to the genus Ischnochiton J. E. Gray, 1847 are commonly found in intertidal rocky shores worldwide, with the exception of the northern Atlantic and Arctic oceans. Ischnochiton species are characterised by imbricate girdle scales that are uniform in size, rounded, sculpted with striae or occasionally smooth. However, their species-level taxonomy is complicated due to the high variation in their shell microstructures. Despite more than a hundred species reported worldwide, taxonomic studies of this group remain relatively unexplored in Korean waters, with only a few species recorded to date.
In this study, we compared the microstructural characteristics of tegmentum sculpture, girdle scales and radula amongst four Korean Ischnochiton species using high-resolution microscopic images and a scanning electron microscope (SEM). Along with mtDNA cox1 sequence comparison, a comprehensive analysis of their morphology revealed that I. hayamii Owada, 2018 was identified for the first time in Korean waters. This species is morphologically distinguished by its small body size of adults, smooth lateral areas on valves and small perinotum scales sculptured with weak longitudinal ribs. Phylogenetic analysis of the mtDNA cox1 sequence provides distinct resolution at the species level, but interrelationships amongst Ischnochiton species remain unresolved. Results from the morphological and molecular analyses presented in this study offer valuable taxonomic information for accurate species identification amongst closely-related Ischnochiton species.
Ischnochiton, Ischnochitonidae, microstructures, tegmentum sculpture, girdle scales, radula, SEM, mtDNA cox1, Korea
Chiton species belonging to the genus Ischnochiton J. E. Gray, 1847 are commonly found on the undersurface of boulders in intertidal rocky shores worldwide, with the exception of the northern Atlantic and Arctic oceans (
In this study, we examined both morphological and molecular sequence data of four Korean Ischnochiton species. For this, we performed a comprehensive analysis of morphological characters (i.e. microstructures of tegmentum sculpture, girdle scales and radula) using high-resolution microscopic images and a scanning electron microscope (SEM). In addition, we conducted a phylogenetic analysis of the mtDNA cox1 sequences and compared them with other Ischnochiton species to infer their phylogenetic relationships.
Specimens were collected from intertidal rocky shores and subtidal zones in Korean waters (Fig.
The map of sampling localities for Korean Ischnochiton species in this study. 1 Ayajin-ri, Toseong-myeon, Goseong-gun, Gangwon-do; 2 Dodong-ri, Ulleung-gun, Gyeongsangbuk-do; 3 Jukbyeon-ri, Jukbyeon-myeon, Uljin-gun, Gyeongsangbuk-do; 4 Sinam-ri, Seosaeng-myeon, Ulju-gun, Ulsan-si; 5 Gujora-ri, Irun-myeon, Geoje-si, Gyeongsangnam-do; 6 Jongdal-ri, Gujwa-eup, Jeju-si, Jeju-do; 7 Is. Mun, Seogwi-dong, Seogwipo-si, Jeju-do; 8 Andeok-myeon, Seogwipo-si, Jeju-do; 9 Daejeong-eup, Seogwipo-si, Jeju-do; 10 Geumgye-ri, Gogun-myeon, Jindo-gun, Jeollanam-do; 11 Dokgot-ri, Daesan-eup, Seosan-si, Chungcheongnam-do; 12 Buk-ri, Deokjeok-myeon, Ongjin-gun, Incheon-si. The species (I. hayamii) discovered for the first time in Korea is denoted by asterisks (*).
For the mtDNA cox1 barcoding of the specimens, total genomic DNA was extracted from the foot tissue using the E.Z.N.A. Mollusc DNA kit (Omega Bio-tek, Norcross, USA) following the manufacturer’s protocols. To amplify a partial sequence of the mtDNA cox1 gene, a polymerase chain reaction (PCR) was conducted using TaKaRa Ex Taq (Takara Bio, Shiga, Japan) with the universal primer set (LCO1490/HCO2198) (
Molecular analyses were conducted, based on a total of 85 mtDNA cox1 sequences (23 and 62 sequences from this study and GenBank, respectively) of seven Ischnochiton species from the north-western Pacific (NWP) available on GenBank (
Sampling localities and GenBank accession numbers of four Korean Ischnochiton species used for phylogenetic analyses in this study.
Species |
Locality |
Locality nos. (§) |
GenBank accession nos. (mtDNA cox1) |
I. boninensis |
Geumgye-ri, Gogun-myeon, Jindo-gun, Jeollanam-do |
10 |
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Gujora-ri, Irun-myeon, Geoje-si, Gyeongsangnam-do |
5 |
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Daejeong-eup, Seogwipo-si, Jeju-do |
9 |
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Dodong-ri, Ulleung-gun, Gyeongsangbuk-do |
2 |
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Jongdal-ri, Gujwa-eup, Jeju-si, Jeju-do |
6 |
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I. comptus |
Dokgot-ri, Daesan-eup, Seosan-si, Chungcheongnam-do |
11 |
|
Jukbyeon-ri, Jukbyeon-myeon, Uljin-gun, Gyeongsangbuk-do |
3 |
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Andeok-myeon, Seogwipo-si, Jeju-do |
8 |
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I. hakodadensis |
Dokgot-ri, Daesan-eup, Seosan-si, Chungcheongnam-do |
11 |
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Buk-ri, Deokjeok-myeon, Ongjin-gun, Incheon-si |
12 |
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Ayajin-ri, Toseong-myeon, Goseong-gun, Gangwon-do |
1 |
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I. hayamii |
Sinam-ri, Seosaeng-myeon, Ulju-gun, Ulsan-si |
4 |
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§: The numbers correspond to the sampling locality numbers shown in Fig.
Ischnochiton boninensis
Ischnochiton zebrinus
Ischnochiton (Ischnochiton) boninensis:
Ischnochiton (Ischnochiton) comptus forma isaoi:
?Ischnochiton (Ischnochiton) zebrinus:
Ischnochiton (Simplischnochiton) boninensis:
Body elongate-oval shaped, medium, less than 30 mm in length (Fig.
External view of Korean Ischnochiton species. A I. boninensis from Jeju, dorsal view; B I. boninensis from Jeju, ventral view; C I. boninensis from Ulleng (NIBRIV0000863007), dorsal view; D I. boninensis from Jeju, dorsal view; E I. boninensis (=I. zebrinus) from Jeju (NIBRIV0000863047), dorsal view; F I. comptus from Jeju (NIBRIV0000863098), dorsal view; G I. comptus from Jeju (NIBRIV0000863098), ventral view; H I. comptus from Jeju, dorsal view; I I. comptus from Jeju, dorsal view (NIBRIV0000863020); J I. comptus from Uljin, dorsal view (NIBRIV0000863048); K I. hakodadensis from Goseong (NIBRIV0000863028), dorsal view; L I. hakodadensis from Goseong (NIBRIV0000863028), ventral view; M I. hakodadensis from Goseong, dorsal view; N I. hayamii from Ulsan (NIBRIV0000863103), dorsal view; O I. hayamii from Ulsan (NIBRIV0000863103), ventral view. Scale bars: A–O = 5 mm. The NIBR voucher specimen numbers are provided in parentheses.
Valves: Head valve semicircular in shape, tegmentum sculpted with about 50 fine radial riblets and a few strong growth lines; radial riblets bifurcate towards margin, but faint towards apex; anterior margin round; posterior margin widely V-shaped (Fig.
Valves of I. boninensis from Jeju (NIBR voucher specimen no. NIBRIV0000863097). A head valve, dorsal view; B 2nd valve, dorsal view; C 4th valve, dorsal view; D tail valve, dorsal view; E head valve, ventral view; F 2nd valve, ventral view; G 4th valve, ventral view; H tail valve, ventral view; I 4th valve, detail of tegmentum surface of central area using scanning electron microscope; J 4th valve, frontal view; K tail valve, lateral view. Abbreviations: ama, antemucronal area; ap, apophyses; ca, central area; e, eave; ip, insertion plate; jl, jugal lamina; js, jugal sinus; la, lateral area; m, mucro; pma, postmucronal area; pms, postmucronal slope; sl, slit; slr, slit ray; t, tooth. Scale bars: A–H, J = 5 mm, I = 200 μm, K = 2 mm.
Valves of I. comptus from Jeju (NIBR voucher specimen no. NIBRIV0000863098). A head valve, dorsal view; B 2nd valve, dorsal view; C 4th valve, dorsal view; D tail valve, dorsal view; E head valve, ventral view; F 2nd valve, ventral view; G 4th valve, ventral view; H tail valve, ventral view; I 4th valve, detail of tegmentum surface of central area using scanning electron microscope; J 4th valve, frontal view; K tail valve, lateral view. Abbreviations: ama, antemucronal area; ap, apophyses; ca, central area; e, eave; ip, insertion plate; jl, jugal lamina; js, jugal sinus; la, lateral area; m, mucro; pma, postmucronal area; pms, postmucronal slope; sl, slit; slr, slit ray; t, tooth. Scale bars: A–H, J = 5 mm, I = 200 μm, K = 2 mm.
Valves of I. hakodadensis from Goseong (NIBR voucher specimen no. NIBRIV0000863046). A head valve, dorsal view; B 2nd valve, dorsal view; C 4th valve, dorsal view; D tail valve, dorsal view; E head valve, ventral view; F 2nd valve, ventral view; G 4th valve, ventral view; H tail valve, ventral view; I 4th valve, detail of tegmentum surface of central area using scanning electron microscope; J 4th valve, frontal view; K tail valve, lateral view. Abbreviations: ama, antemucronal area; ap, apophyses; ca, central area; e, eave; ip, insertion plate; ja, jugal area; jl, jugal lamina; js, jugal sinus; la, lateral area; m, mucro; pa, pleural area; pma, postmucronal area; pms, postmucronal slope; sl, slit; slr, slit ray; t, tooth. Scale bars: A–H, J = 5 mm, I = 200 μm, K = 2 mm.
Valves of I. hayamii from Ulsan (NIBR voucher specimen no. NIBRIV0000863103). A head valve, dorsal view; B 2nd valve, dorsal view; C 4th valve, dorsal view; D tail valve, dorsal view; E head valve, ventral view; F 2nd valve, ventral view; G 4th valve, ventral view; H tail valve, ventral view; I 4th valve, detail of tegmentum surface of central area using scanning electron microscope; J 4th valve, frontal view; K tail valve, lateral view using scanning electron microscope. Abbreviations: ama, antemucronal area; ap, apophyses; ca, central area; e, eave; ip, insertion plate; jl, jugal lamina; js, jugal sinus; la, lateral area; m, mucro; pma, postmucronal area; pms, postmucronal slope; sl, slit; slr, slit ray; t, tooth. Scale bars: A–H, J = 2 mm, I = 200 μm, K = 1 mm.
Girdle: Perinotum scales (ps: length [L] 91–110.8 μm, width [W] 120.3–190.7 μm) small, oval, flat, slightly bent, sculpted with 9–16 fine longitudinal ribs converging to distal tip, densely overlapped, parallel to outer margin (Fig.
Microstructure of girdles in Ischnochiton species using scanning electron microscope. A–D I. boninensis; E–H I. comptus (NIBRIV0000863098); I–L I. hakodadensis (NIBRIV0000863046); M–P I. hayamii (NIBRIV0000863103); A perinotum scales and marginal spicules of I. boninensis; B perinotum scales of I. boninensis; C marginal spicules of I. boninensis; D hyponotum scales of I. boninensis; E perinotum scales and marginal spicules of I. comptus; F perinotum scales of I. comptus; G marginal spicules of I. comptus; H hyponotum scales of I. comptus; I perinotum scales and marginal spicules of I. hakodadensis; J perinotum scales of I. hakodadensis; K marginal spicules of I. hakodadensis; L hyponotum scales of I. hakodadensis; M perinotum scales and marginal spicules of I. hayamii; N perinotum scales of I. hayamii; O marginal spicules of I. hayamii; P hyponotum scales of I. hayamii. Abbreviations: hs, hyponotum scale; lmsp, large marginal spicule; mmsp, middle marginal spicule; pps, peripheral perinotum scale; ps, perinotum scale; smsp, small marginal spicule. Scale bars: A–P = 50 μm. The NIBR voucher specimen numbers are provided in parentheses.
Radula: Radula teeth symmetrical (Fig.
Microstructure of radula of Ischnochiton species using scanning electron microscope. A I. boninensis (NIBRIV0000863095); B I. comptus (NIBRIV0000863098); C I. hakodadensis; D I. hayamii (NIBRIV0000863103). Abbreviations: c, central tooth; cl, centro-lateral tooth; h, head of major lateral tooth; im, inner marginal tooth; isl, inner small lateral tooth; mlt, major lateral tooth; mm, middle marginal tooth; mu, major uncinus tooth, om; outer marginal tooth; osl, outer small lateral tooth; pp, petaloid process. Scale bars: A–D = 100 μm. The NIBR voucher specimen numbers are provided in parentheses.
China, Hong Kong, Japan, Vietnam and Korea.
Japan: Sagami Misaki and Bonin Islands (Ogasawara).
This species is morphologically similar to I. comptus (Gould, 1859), but easily distinguished by the size and microstructure of its perinotum scales (Table
I. boninensis |
I. comptus |
I. hakodadensis |
I. hayamii |
|
Body shape |
elongate-oval |
oval |
oval |
oval |
Adult body size |
medium (12.9–26 mm) |
medium (15.7–19.4 mm) |
medium (18.6–25 mm) |
small (13–15.2 mm) |
Dorsal elevation |
moderate |
moderate |
moderate |
moderate |
Back shape (in frontal view) |
rounded |
subcarinated |
subcarinated |
carinated |
Central area of intermediate valve |
small, elongate granules in quincunx pattern |
low, oval granules in quincunx pattern |
almost smooth |
minute granules in quincunx pattern |
Lateral area of intermediate valve |
slightly raised, with 5–7 radial ribs |
somewhat raised, with 4–5 faint radial ribs |
slightly raised, with 6–8 fine radial ribs and strong growth lines |
hardly raised, almost smooth with faint radial ribs |
Number of slit on intermediate valve |
1 |
1 |
2–3 |
1 |
Mucro |
subcentral |
subcentral |
antemedian |
subcentral |
Postmucronal slope |
weakly concave |
straight |
steep, straight |
concave |
Perinotum scales |
arranged parallel, small (150–250 μm), with 8–18 fine ribs |
arranged parallel, large (300–400 μm), smooth |
arranged diagonally, medium (200–300 μm), nearly smooth with faint ribs |
arranged parallel, small (150–250 μm), almost smooth with weakly fine ribs |
Radula: major lateral teeth |
bicuspid, sharp |
bicuspid, short, angled |
bicuspid, blunted |
bicuspid, rounded |
Uncorrected p-distances (%) for the mtDNA cox1 sequences amongst seven north-western Pacific Ischnochiton species. The bold type indicates p-distances amongst individuals of the same species.
I. hayamii |
I. boninensis |
I. paululus |
I. poppei |
I. comptus |
I. manazuruensis |
I. hakodadensis |
|
I. hayamii |
0–2.15 |
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I. boninensis |
10.23–12.03 |
0–1.80 |
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I. paululus |
11.85–13.11 |
13.82–14.72 |
– |
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I. poppei |
12.57–12.75 |
10.95–11.67 |
13.64 |
– |
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I. comptus |
12.21–14.18 |
12.03–13.11 |
13.64–14.36 |
11.31–12.03 |
0–1.28 |
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I. manazuruensis |
12.75–15.08 |
12.03–13.82 |
15.08–15.80 |
14.00–15.44 |
11.49–13.46 |
0.18–3.05 |
|
I. hakodadensis |
15.80–16.70 |
15.98–16.88 |
19.57–19.93 |
15.80–16.16 |
15.80–16.70 |
16.34–17.41 |
0–0.90 |
Chiton (Leptochiton) comptus
Ischnochiton comptus:
Ischnochiton thaanumi
Ischnochiton (Ischnochiton) comptus:
Ischnochiton (Ischnochiton) comptus forma comptus:
Ischnochiton (Haploplax) comptus:
Body oval-shaped, less than 25 mm in length (Fig.
Valves: Head valve semicircular, tegmentum sculpted with weak microgranules; ca. 50 radial riblets gradually fainter towards apex; growth lines rather distinct; anterior margin round; posterior margin widely V-shaped (Fig.
Girdle: Perinotum scales (ps: L 114.8–192.5 μm, W 146.7–232.7 μm) large, oval, slightly curved, imbricating, with faint concentric lines and indistinct scratches towards apex, parallel to outer margin (Fig.
Radula: Radula symmetrical rows (Fig.
Australia, China, Hong Kong, Indonesia, Japan, Philippines, Taiwan, Vietnam and Korea.
Japan: Oushima (Amami Oshima, Kagoshima Prefecture).
This species is considered taxonomically challenging due to its extremely high morphological variation, as well as recently discovered cryptic species. Recent studies, based on a combination of morphological and molecular analyses, have uncovered two cryptic species (
Ischnochiton (Ischnoradsia) hakodadensis Carpenter in
Ischnoradsia hakodadensis:
Ischnochiton (Ischnochiton) hakodadensis:
Ischnochiton (Ischnoradsia) hakodatensis [sic]:
Ischnochiton hakodadensis:
Body shape oval, rarely over 30 mm in length (Fig.
Valves: Head valve semicircular, tegmentum sculpted with ca. 65 fine radial riblets, cut into several distinct concentric growth lines; anterior margin round; posterior margin widely V-shaped; (Fig.
Girdle: Perinotum scales (ps: L 64–122 μm, W 124.9–203.5 μm) small, slightly convex, imbricating, nearly smooth or with faint longitudinal ribs, arranged diagonally to outer margin (Fig.
Radula: Radula symmetrical rows (Fig.
China, Japan, Russia (Vladivostok) and Korea.
Japan: Hakodadi (Hakodate, Hokkaido).
This species is relatively large in body size (> 30 mm) and easily distinguished from other congeneric species by the following characteristics. I. hakodadensis has 2–3 slits in the intermediate valves (Fig.
Ischnochiton hayamii
Body oval-shaped, small to medium in size (Fig.
Valves: Head valve semicircular in shape, tegmentum almost smooth with faint growth line; anterior margin round; posterior margin widely V-shaped (Fig.
Girdle: Perinotum covered with flat, oval, slightly bending, nearly smooth and overlapping scales (Fig.
Radula: Radula symmetrical rows with 17 teeth per transverse row (Fig.
Japan (Zushi, Shimoda, and Hakodate) and Korea (Ulsan).
Japan: Zushi, Kanagawa Prefecture.
Previously, three Ischnochiton species have been reported in Korea (
As documented in many other molluscan taxa, the morphological similarities shared amongst these Ischnochiton species, coupled with a high degree of morphological variation, make it challenging to accurately distinguish them based solely on morphological characteristics. The present study provides a comprehensive morphological comparison of four Korean Ischnochiton species by examining detailed characteristics, such as body size, back shape and the microstructures of the valves, girdle and radula (see Table
To verify species identification based on morphological data, molecular phylogenetic analyses were conducted using mtDNA cox1 sequence data from four Korean Ischnochiton species (determined in this study) and additional sequences obtained from seven north-western Pacific (NWP) species documented in previous studies (
We thank Youngheon Shin and Yeongjae Choe and Yucheol Lee (Korea National Park Service, Korea), for their assistance in sampling the specimens. This work was supported by a grant from the National Institute of Biological Resources (NIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NIBR202333201) and the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2020R1A2C2005393).