Biodiversity Data Journal : Data Paper (Biosciences)
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Data Paper (Biosciences)
Systematic camera trapping survey for terrestrial vertebrates in Xuan Lien Nature Reserve, Vietnam
expand article infoThanh Van Nguyen, Anh The Luu, Hung Viet Pham, Ha Manh Nguyen§, Tam Anh Pham|, Mai Thi Nguyen, Minh Duc Le‡,#, Anh Tuan Nguyen#
‡ Central Institute for Natural Resources and Environmental Studies, Vietnam National University, Hanoi, Hanoi, Vietnam
§ Center for Nature Conservation and Development, Hanoi, Vietnam
| Xuan Lien Nature Reserve, Thanh Hoa, Vietnam
¶ Hong Duc University, Thanh Hoa, Vietnam
# Faculty of Environmental Sciences, University of Science, Vietnam National University, Hanoi, Hanoi, Vietnam
Open Access

Abstract

Background

Xuan Lien Nature Reserve was established in 1999 to protect important habitats and wildlife in the northern part of the Annamites in Vietnam. While Xuan Lien is home to many threatened species, it has experienced a high level of human disturbance over the last decades. To document and provide baseline data on the status and distribution of the terrestrial vertebrate fauna community in the region, we conducted a systematic camera trapping survey in Xuan Lien Nature Reserve in 2023. The data collected during the survey will help design proper conservation measures to better conserve the remaining species.

New information

Our study investigates and updates the species richness of mid- to large-sized terrestrial vertebrates, thus providing essential information for developing conservation strategies in Xuan Lien Nature Reserve, Vietnam. As camera traps were set up in a grid-based design, our survey also generated the first-ever systematic data for terrestrial vertebrate fauna in the area. The study covers approximately 21,000 hectares (about 77% of the area), using 35 camera trap stations; each station consists of two cameras. In total, the final dataset consists of 6,276 trap nights, recording at least 46 species in 39 genera. The results suggest that Xuan Lien is a key stronghold for small carnivores, based on the diversity of such species groups in the Reserve. We failed to detect the previously documented Roosevelt’s muntjac (Muntiacus rooseveltorum Osgood, 1932) and we only documented a single record of the northern red muntjac (Muntiacus vaginalis Boddaert, 1785). Our survey confirms the severity of overhunting and other anthropogenic threats to the mammal fauna, especially ungulates, in the Reserve.

Keywords

hunting threats, monitoring, muntjac, small carnivores

Introduction

Camera trapping has been widely used recently to survey the terrestrial vertebrate fauna in Vietnam due to its efficiency in the detection of terrestrial animals (Nguyen et al. 2019, Nguyen et al. 2020, Tilker et al. 2020a). Particularly in the last decade, systematic grid-based design for camera-trapping studies has become a method of choice amongst researchers in the region. The grid-based system allows scientists to statistically estimate the probability of occupancy and other important parameters of studied communities rather than report the presence or absence of interesting species (Abrams et al. 2018, Tilker et al. 2020a, Tilker et al. 2020b). Since its first use in Vietnam in the early 2010s, many protected areas in the central and southern regions of Vietnam have employed systematic camera traps to provide baseline data and monitor important species populations (Tilker et al. 2020b). However, its usage in protected areas from Thanh Hoa Province to the north of the country has been much less common (Willcox et al. 2014, Nguyen et al. 2022). Hence, information on the population and distribution of vulnerable vertebrate species in northern Vietnam has been severely limited.

Xuan Lien Nature Reserve, Thanh Hoa Province, Vietnam, is located in the northern part of the Annamites with approximately 27,000 hectares of forested area. Together with the nearby Pu Hoat Nature Reserve in Nghe An Province, it forms a contiguous protected landscape of around 115,000 hectares (Trai et al. 1999). The most recent field survey on mammal diversity in Xuan Lien was conducted in 2011 - 2012 and the main methods were transect survey, night survey and small mammal traps (Phuong et al. 2013). The survey provided a list of 80 mammal species in Xuan Lien. A subsequent genetic analysis survey using hunter's and trophy samples added one more mammal species, the small-toothed palm civet (Arctogalidia trivirgata Gray, 1832) (Giang et al. 2016). Our study is the first to employ a systematic camera survey to assess the terrestrial vertebrate community in Xuan Lien Nature Reserve. We aim to provide baseline data that can be used for future conservation initiatives in Xuan Lien and surrounding regions.

General description

Purpose: 

The survey is conducted to document the occurrence and distribution of terrestrial vertebrates in Xuan Lien Nature Reserve, Thanh Hoa, Vietnam, using a camera trap survey. The survey follows a repeatable, systematic grid-based design with the intention of providing baseline data and establishing a Camelot (Hendry and Mann 2018) monitoring database to support future conservation initiatives and evaluate the effectiveness of protection activities in the area.

Project description

Title: 

Systematic camera trapping survey for terrestrial vertebrates in Xuan Lien Nature Reserve, Vietnam.

Study area description: 

Xuan Lien Nature Reserve is located in Thanh Hoa Province, Vietnam and it is located in the northern Annamite landscape. The Reserve was formally established in 1999 and there have been a number of biodiversity surveys in Xuan Lien since the late 1990s. It reportedly still supports several rare and threatened mammals, such as the gaur (Bos gaurus C.H. Smith, 1827), the northern pygmy slow loris (Xanthonycticebus intermedius Dao Van Tien, 1960), the Asiatic black bear (Ursus thibetanus G. Cuvier, 1823), the Indochinese grey langur (Trachypithecus crepusculus Elliot, 1909), the northern white-cheeked gibbon (Nomascus leucogeny Ogilby, 1840), the Owston’s civet (Chrotogale owstoni Thomas, 1912) and the stump-tailed macaque (Macaca arctoides I.Geoffroy Saint-Hilaire, 1831) (Trai et al. 1999, Phuong et al. 2013, Giang et al. 2016). However, populations of the species in Xuan Lien have substantially declined due to illegal logging and hunting (Trai et al. 1999, Hai et al. 2016). Surprisingly, in 2014, genetic and camera-trapping surveys revealed that the Roosevelt’s muntjac (Muntiacus rooseveltorum Osgood, 1932), an enigmatic and extremely elusive species that had only been recorded in Laos, also occurred in the Reserve (Le et al. 2014).

Funding: 

This research has been done under the research project QG.22.72 of Vietnam National University, Hanoi.

Sampling methods

Sampling description: 

Our survey was conducted from February 2023 to June 2023. The survey followed a systematic grid-based camera trapping design developed by Abrams et al. (2018). We intended to survey the entire Reserve area; however, due to the operation of the Cua Dat hydropower plant in the south-eastern part of the Reserve and the subsequent raised water level of the Chu River since 2010, some areas of Xuan Lien have been isolated for around 15 years. Subsequently, our survey only covered about 77% of the Reserve. However, the core zone of the Reserve was fully covered by our survey and such areas were believed to still harbour a high density of vertebrates (Phuong et al. 2013, Hai et al. 2016) (Fig. 1).

Figure 1.  

Camera station locations in Xuan Lien Nature Reserve.

In total, we deployed 70 camera traps at 35 locations, which were spaced about 2.5 km apart with a maximum acceptable deviation of 10% (approximately 250 m). Hence, the minimum distance between any camera station was 2.0 km. However, at one station, both cameras were lost and, therefore, we were only able to retrieve 68 cameras at 34 stations. Each camera-trap station consisted of two non-facing camera-trap devices (Reconyx Hyperfire) that were set within a 20 × 20 m plot. Cameras were placed on tree trunks 20–40 cm above the ground and were set up to take three bursts of photos per trigger without delay, recording the date and time of each photo. All cameras were set at a high sensitivity level and were working continuously during the survey. The cameras were deployed for an average of 92.2 ± 2.3 days.

Quality control: 

To maximise wildlife records, we configured all cameras to be activated by motion and the sensitivity was set at very high level. Each camera took three photos per trigger, with picture interval in rapid-fire mode, which means the cameras took multiple shots in rapid succession. All cameras were set to run continuously with no rest period and the flash output was at high level.

To ensure the correct scientific name and common name of species, the taxonomic nomenclature followed the Catalogue of Life and GBIF Backbone Taxonomy. In addition, we used the IUCN Red List of Threatened Species and Vietnam Red Data Book 2007 to check the species' conservation status (Ministry of Science and Technology of Vietnam and Vietnamese Academy of Science and Technology 2007). The identification of these species was originally performed and confirmed by two experts who are experienced with identifying Annamite terrestrial animal camera-trap images. Next, all identified images were double-checked and re-confirmed by other independent species experts. Afterwards, all ambiguous records that could not be identified at the genus level were excluded from the final analysis. The records belonging to Muridae were thus removed from the dataset as we were unable to identify them at the species level. Detected domestic fowl, domestic dogs, domestic cattle and human records were also excluded.

Step description: 

Collected data were copied into folders named by camera and station codes. Each photo was then identified and moved to a corresponding species sub-folder. The completely identified camera dataset was then checked and analysed using the camtrapR package (Niedballa et al. 2016) in R (R Core Team 2024) to generate a basic statistical report for the collected data. Detections from the two camera devices at the same station and within a 60-minute threshold are considered a single independent detection. Naïve occupancy was calculated as a proportion of the number of camera stations occupied by one particular species and the total number of camera stations (Rovero et al. 2014).

Geographic coverage

Description: 

Xuan Lien Nature Reserve, Thanh Hoa Province, Vietnam.

Coordinates: 

19.854 and 20.021 Latitude; 104.956 and 105.301 Longitude.

Taxonomic coverage

Description: 

Mammals, birds and reptiles were identified to the species level, whenever possible.

Taxa included:
Rank Scientific Name Common Name
class Mammalia Mammals
class Aves Birds
class Reptilia Reptiles

Temporal coverage

Notes: 

2023-2-27 - 2023-6-09

Usage licence

Usage licence: 
Other
IP rights notes: 

Creative Commons Attribution Non-Commercial (CC-BY-NC 4.0).

Data resources

Data package title: 
Systematic camera trapping survey for terrestrial vertebrates in Xuan Lien Nature Reserve, Thanh Hoa Province, Vietnam.
Number of data sets: 
1
Data set name: 
Systematic camera trapping survey for terrestrial vertebrates in Xuan Lien Nature Reserve, Thanh Hoa Province, Vietnam.
Data format: 
Darwin Core Archive
Data format version: 
Version 1
Description: 

The dataset is published on the Global Biodiversity Information Facility platform, GBIF (Nguyen and Le 2024). It includes all observations of a species where classification was possible. Observations of humans, domestic fowl, domestic dogs and domestic cattle are excluded from the dataset. It is structured as an occurrence dataset, formatted according to the recommendations of the Darwin Core Archive. In this dataset, each row corresponds to an independent detection.

Column label Column description
occurrenceID Unique identifier of the record.
basisOfRecord The specific nature of the data record.
occurrenceStatus A statement about the presence or absence of a taxon at a location.
eventDate Date and time when the occurrence occurred.
kingdom The full scientific name of the kingdom in which the taxon is classified.
scientificName The full scientific name, with authorship and date information, if known.
taxonRank The taxonomic rank of the most specific name in the scientificName.
decimalLatitude The geographic longitude at which the occurrence took place.
decimalLongitude The geographic longitude at which the occurrence took place.
geodeticDatum Spatial reference system upon which the geographic coordinates given in decimalLatitude and decimalLongitude are based.
countryCode ISO code of the country in which camera location occurs.
dataGeneralizations Generalisation measures taken to make the shared coordinates less specific than in their original form. High quality data are available upon reasonable request.
class Full scientific name of the class in which the taxon is classified.
family Full scientific name of the family in which the taxon is classified.
genus Full scientific name of the genus in which the taxon is classified.
coordinateUncertaintyInMeters The horizontal distance (in metres) from the coordinates given in decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the location.
individualCount The number of individuals present at the time of the occurrence.
organismQuantity A number or enumeration value for the quantity of the organism.
organismQuantityType The type of quantification system used for the quantity of organismQuantity.
dynamicProperties IUCN Red List status of the taxon.
minimumElevationInMeters The lower limit of the range of elevation in metres.
maximumElevationInMeters The upper limit of the range of elevation in metres.

Additional information

Results

A total of 1,002 independent records of at least 46 species, including 21 mammals, 24 birds and one reptile, were documented in our survey. For mammals, 19 taxa were identified to species level and two taxa were only identifiable to genus level (Table 1). Amongst the detected families, Phasianidae had the highest species richness (six species). The survey revealed the presence of three macaque species of the family Cercopithecidae, including the stump-tailed macaque (Macaca arctoides), the Assamese macaque (Macaca assamensis McClelland, 1840) and the rhesus macaque (Macaca mulatta Zimmermann, 1780). The species with the highest occurrence records were the ferret badger (Melogale I.Geoffroy Saint-Hilaire, 1831 spp.), the yellow-throated marten (Martes flavigula Boddaert, 1785) and the Asian palm civet (Paradoxurus hermaphroditus Pallas, 1777), with naïve occupancy of 0.765, 0.471 and 0.5, respectively (Table 1). Additionally, we recorded several rare species with high conservation value, including the Critically Endangered Sunda pangolin (Manis javanica Desmarest, 1822) (Challender et al. 2019), the Vulnerable mainland serow (Capricornis milneedwardsii David, 1869) and the Vulnerable stump-tailed macaque (Macaca arctoides) (Fig. 2).

Table 1.

Recorded species during the survey in Xuan Lien Nature Reserve in 2023.

Class

Family

Species

IUCN

Vietnam Red Data Book 2007

Independent detection

Recorded station

Naïve occupancy

Mammalia

Tupaiidae

Tupaia belangeri Wagner, 1841

LC

29

14

0.412

Cercopithecidae

Macaca arctoides I.Geoffroy Saint-Hilaire, 1831

VU

VU

42

11

0.324

Macaca assamensis McClelland, 1840

NT

VU

4

2

0.059

Macaca mulatta Zimmermann, 1780

LC

LR

4

2

0.059

Mustelidae

Martes flavigula Boddaert, 1785

LC

20

16

0.471

Melogale spp. I.Geoffroy Saint-Hilaire, 1831

LC

257

26

0.765

Lutra sp. Brisson, 1762

1

1

0.029

Viverridae

Paguma larvata C.E.H. Smith, 1827

LC

6

3

0.088

Paradoxurus hermaphroditus Pallas, 1777

LC

31

17

0.500

Viverra zibetha Linnaeus, 1758

LC

21

9

0.265

Herpestidae

Herpestes urva Hodgson, 1836

LC

36

14

0.412

Felidae

Prionailurus bengalensis Kerr, 1792

LC

22

13

0.382

Prionodontidae

Prionodon pardicolor Hodgson, 1841

LC

VU

16

7

0.206

Suidae

Sus scrofa Linnaeus, 1758

LC

15

11

0.324

Cervidae

Muntiacus vaginalis Boddaert, 1785

LC

VU

1

1

0.029

Bovidae

Capricornis milneedwardsii David, 1869

NT

EN

3

3

0.088

Hystricidae

Hystrix brachyura Linnaeus, 1758

LC

10

7

0.206

Atherurus macrourus Linnaeus, 1758

LC

1

1

0.029

Sciuridae

Callosciurus erythraeus Pallas, 1779

LC

15

6

0.176

Dremomys rufigenis Blanford, 1878

LC

20

5

0.147

Manidae

Manis javanica Desmarest, 1822

CR

EN

4

2

0.059

Aves

Phasianidae

Arborophila chloropus Blyth, 1859

LC

19

2

0.059

Arborophila brunneopectus Blyth, 1855

LC

13

6

0.176

Arborophila rufogularis Blyth, 1849

LC

9

5

0.147

Gallus gallus Linnaeus, 1758

LC

49

15

0.441

Lophura nycthemera Linnaeus, 1758

LC

LR

49

12

0.353

Polyplectron bicalcaratum Linnaeus, 1758

LC

27

8

0.235

Columbidae

Chalcophaps indica Linnaeus, 1758

LC

38

7

0.206

Pitta soror R.G.W.Ramsay, 1881

LC

40

19

0.559

Pitta elliotii Oustalet, 1874

LC

29

5

0.147

Corvidae

Dendrocitta formosae Swinhoe, 1863

LC

2

1

0.029

Cissa hypoleuca Salvadori & Giglioli, 1885

LC

1

1

0.029

Dicruridae

Dicrurus macrocercus Vieillot, 1817

LC

2

1

0.029

Turdidae

Zoothera citrina Latham, 1790

LC

8

5

0.147

Zoothera dauma Latham, 1790

LC

32

10

0.294

Muscicapidae

Myophonus caeruleus Scopoli, 1786

LC

101

6

0.176

Larvivora cyane Pallas, 1776

LC

1

1

0.029

Copsychus malabaricus Scopoli, 1786

LC

1

1

0.029

Leiotrichidae

Garrulax castanotis Ogilvie-Grant, 1899

LC

3

2

0.059

Garrulax leucolophus Hardwicke, 1816

LC

2

2

0.059

Pellorneidae

Pellorneum tickelli Blyth, 1859

LC

10

5

0.147

Schoeniparus rufogularis Mandelli, 1873

LC

1

1

0.029

Timaliidae

Erythrogenys hypoleucos Blyth, 1844

LC

1

1

0.029

Scolopacidae

Scolopax rusticola Linnaeus, 1758

LC

1

1

0.029

Ardeidae

Gorsachius melanolophus Raffles, 1822

LC

1

1

0.029

Reptilia

Varanidae

Varanus salvator Laurenti, 1768

LC

EN

4

4

0.118

Figure 2.  

Examples of records from our survey at Xuan Lien Nature Reserve, Thanh Hoa Province, Vietnam. From top left, clockwise: the Sunda pangolin (Manis javanica), the stump-tailed macaque (Macaca arctoides), the northern red muntjac (Muntiacus vaginalis), the large Indian civet (Viverra zibetha Linnaeus, 1758), the grey peacock-pheasant (Polyplectron bicalcaratum Linnaeus, 1758), the silver pheasant (Lophura nycthemera Linnaeus, 1758), the Asian water monitor (Varanus salvator Laurenti, 1768) and the Chinese serow (Capricornis milneedwardsii).

Interestingly, we documented a number of various small carnivore species, including the large Indian civet (Viverra zibetha Linnaeus, 1758), the masked palm civet (Paguma larvata C.E.H. Smith, 1827), the spotted linsang (Prionodon pardicolor Hodgson, 1841), the Asian palm civet (Paradoxurus hermaphroditus), the crab-eating mongoose (Herpestes urva Hodgson, 1836), the leopard cat (Prionailurus bengalensis Kerr, 1792) and the yellow-throated marten (Martes flavigula) (Table 1). Their relative commonness in Xuan Lien Nature Reserve highlights the Reserve's high diversity of small carnivores, especially civets. In contrast, we only obtained a single record of the northern red muntjac (Muntiacus vaginalis Boddaert, 1785) and we did not record the Roosevelt’s muntjac (Muntiacus rooseveltorum) during the survey. Furthermore, four species that had IUCN conservation status of near threatened and above recorded in our survey included the stump-tailed macaque (Macaca arctoides), the Assam macaque (Macaca assamensis), the Chinese serow (Capricornis milneedwardsii) and the Sunda pangolin (Manis javanica). All records of those species came from 14 camera stations in mostly undisturbed habitats of primary evergreen forests, with little to no sign of human activities nearby. The smallest distance from any of those sites to the nearest main roads or human settlements was at least 2.5 km. Four stations that documented the majority of the records (60.4%) for those species were all near or on the ridgeline of the mountain range. Hence, it is likely that remoteness and terrain difficulty play an important role in protecting the remaining threatened taxa in Xuan Lien.

Discussion

The most recent field survey on mammal diversity for Xuan Lien Nature Reserve was published in 2013 (Phuong et al. 2013) using a combination of transect survey, night survey and traps. The study provided a list of 80 mammal species in Xuan Lien. A subsequent study using molecular approaches confirmed an additional mammal species, the small-toothed palm civet (Arctogalidia trivirgata) (Giang et al. 2016). Hence, the number of documented mammal species from our survey accounts for approximately 31% of the previously reported mammal species in Xuan Lien. Our survey did not document any new species, but validated previous mammal records via camera trap image data for the first time. Additionally, camera trap stations that record the greatest number of mammals were deployed in the south-western part of the Reserve, which is also the most remote region in Xuan Lien (Fig. 1).

Amongst our records, the Sunda pangolin is the least expected species, as Xuan Lien falls within the distribution range of the Chinese pangolin (Manis pentadactyla Linnaeus, 1758) (Phuong et al. 2013, Challender et al. 2019a, Challender et al. 2019b). Two pangolin experts rigorously verified the Sunda pangolin in our study. Nevertheless, its detection in our study might be a result of unwarranted releasing activities, as suggested by the Reserve staff. Furthermore, two muntjac species, including the northern red muntjac and the Roosevelt’s muntjac, are known to occur in Xuan Lien (Phuong et al. 2013, Le et al. 2014). As our camera stations were set in the elevation range of 150–1,300 m, within the known elevation range of the species (Tilker et al. 2020b, Nguyen et al. 2021) and our survey covered 77% of the Reserve, the lack of Roosevelt’s muntjac record suggests that, if the species still persists, it may occur at a very low density. Additionally, the fact that we only documented a single record of the northern red muntjac, which is naturally more resilient to hunting pressure and is more widely distributed across various forest habitats in Vietnam (Nguyen et al. 2021, Alexiou et al. 2022), raises serious concerns over potential overhunting and habitat loss threats in the Reserve.

During our survey, we documented several signs of ongoing human disturbances inside the Reserve, including four illegal logger camps, small mammal traps and snare lines. Some of those activities were spotted deep inside the Reserve and interviews with local people revealed that exploitation of forest products, while illegal, still happened occasionally in Xuan Lien. Accessibility to the Reserve from the dam and the road systems may facilitate illicit activities (Fig. 1). Therefore, regular patrols and law enforcement activities will play an important role in protecting the remaining species in Xuan Lien Nature Reserve.

Acknowledgements

This research has been conducted under the research project QG.22.72 of Vietnam National University, Hanoi. The authors thank the management board and staff of Xuan Lien Nature Reserve and other local authorities for their support. This work would have been impossible without the enthusiastic help of local people and field assistants in Xuan Lien.

Author contributions

MDL, TVN and ATN designed the study; TVN and ATN led on fieldwork, data analysis and writing; MDL, ATL and HVP acquired funding and supported the fieldwork and writing; HMN, TAP and MTN supported the fieldwork and writing.

References

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