Biodiversity Data Journal :
Taxonomy & Inventories
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Corresponding author: Zong-Long Luo (luozonglongfungi@163.com), Kevin D. Hyde (kdhyde3@gmail.com)
Academic editor: Ning Jiang
Received: 27 Sep 2024 | Accepted: 18 Nov 2024 | Published: 22 Nov 2024
© 2024 Hong-Wei Shen, Dan-Feng Bao, Na Wu, Fatimah Al-Otibi, Zong-Long Luo, Kevin D. Hyde
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Shen H-W, Bao D-F, Wu N, Al-Otibi F, Luo Z-L, Hyde KD (2024) Paramirandina guttulata (Microthyriaceae, Microthyriales), a new lignicolous freshwater fungi from a plateau lake in Yunnan Province, China. Biodiversity Data Journal 12: e137989. https://doi.org/10.3897/BDJ.12.e137989
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Based on unique morphological features and phylogenetic analysis of combined LSU and ITS sequences, Paramirandina guttulata is established as the third species in Paramirandina, along with P. aquatica and P. cymbiformis. All three species of Paramirandina were reported from freshwater habitats in China.
Paramirandina guttulata sp. nov. is a morphologically conspicuous hyphomycetes species, collected from a plateau lake (Dujuanhu Lake) in Yunnan Province, China. The key distinguishing characteristics of P. guttulata are scattered or gregarious conidiophores, polyblastic, terminal, sympodial conidiogenous cells and fusiform, cymbiform, 4–6-septate, guttulate, hyaline conidia that are solitary or in chains and with truncate base and obtuse apex. Detailed descriptions and illustrations are provided for the new species.
new species, Dothideomycetes, hyphomycetes, phylogeny, taxonomy
Lignicolous freshwater fungi grow on submerged woody debris in freshwater habitats and play an important role in the material and energy cycle of freshwater ecosystems (
Microthyriaceae was introduced by
Paramirandina was introduced by
During the investigation of lignicolous freshwater fungi from a plateau lake in Yunnan Province, a conspicuous hyphomycetes was discovered on the submerged woody substrate. A detailed morphological description and comprehensive phylogenetic analysis confirmed the distinctiveness and phylogenetic placement of the species within Paramirandina.
Fresh specimens were collected from Dujuanhu Lake in Yunnan Province, China on 24 February 2023. Sample collection, processing and cultivation were performed according to
Single spore isolations were performed as follows: the tip of a sterile toothpick dipped in sterile water was used to capture the conidia of the target colony directly from the specimen; the conidia were then streaked on the surface of water agar (WA) or potato dextrose agar (PDA) and incubated at room temperature overnight. The single germinated conidia were transferred to fresh PDA medium and incubated at room temperature. A few of the remaining germinated spores in the media plate were separated along with agar using a needle and transferred on to water-mounted glass slides for photographs to capture the germination position of the germ tubes. After finalising the observation and isolation, the specimens were dried under natural light, wrapped in absorbent paper and placed in a ziplock bag with mothballs. Specimens were deposited in the Herbarium of Kunming Institute of Botany, Academia Sinica (KUN-HKAS). The living cultures were deposited in Dali University Culture Collection (DLUCC). Faces of Fungi number were acquired as guidelines by
DNA extraction, PCR amplification, sequencing and phylogenetic analysis were undertaken following the methods of
ITS and LSU genes were amplified using ITS5/ITS4 (
BLAST searches were performed to retrieve similar sequences from GenBank (http://www.ncbi.nlm.nih.gov, accessed on 14 Jun 2024). The sequences were aligned using MAFFT online service: multiple alignment programme MAFFT v.7 (http://mafft.cbrc.jp/alignment/server/index.html, accessed on 14 Jun 2024;
Maximum Likelihood (ML) analysis was performed setting RAxML-HPC2 on XSEDE (8.2.12) in CIPRES Science Gateway (http://www.phylo.org/portal2; accessed on 25 Jun 2024;
Phylogenetic trees were visualized using FigTree v.1.4.0 (http://tree.bio.ed.ac.uk /software/figtree/), with editing and typesetting using Adobe Illustrator (AI) (Adobe Systems Inc., San Jose, CA, USA). The new sequences were submitted in GenBank and the strain information used in this paper are provided in Table
Taxa used in the phylogenetic analyses and their corresponding GenBank accession numbers. The ex-type strains are indicated using “T” after strain numbers; newly-generated sequences are indicated in bold. “–” stands for no sequence data in GenBank.
Taxon |
Voucher/Strain Number |
GenBank Accession Number |
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LSU |
ITS |
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Antidactylaria ampulliforma |
CBS 223.59 |
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Antidactylaria minifimbriata |
CGMCC 3.18825 T |
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Anungitopsis speciosa |
CBS 181.95 T |
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Condylospora vietnamensis |
NBRC 107639 T |
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Hamatispora phuquocensis |
VICCF 1219 T |
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Heliocephala natarajanii |
MUCL 43745 T |
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Heliocephala zimbabweensis |
MUCL 40019 T |
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Isthmomyces dissimilis |
CGMCC 3 18826 T |
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Isthmomyces lanceatus |
CBS 622.66 T |
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Isthmomyces macrosporus |
CGMCC 3.18824 T |
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Isthmomyces oxysporus |
CGMCC 3.18821 T |
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Keqinzhangia aquatica |
YMF 1.04262 T |
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Lichenopeltella pinophylla |
CBS 143816 T |
– |
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Microthyrium buxicola |
MFLUCC 15-0212 T |
– |
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Microthyrium fici-septicae |
MFLUCC 20-0174 T |
– |
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Microthyrium microscopicum |
CBS 115976 |
– |
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Microthyrium propagulensis |
IFRD 9037 T |
– |
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Neoanungitea eucalypti |
CBS 143173 T |
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Neoscolecobasidium agapanthi |
CPC 28778 T |
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Nothoanungitopsis urophyllae |
CBS 146799 T |
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Paramirandina aquatica |
GZCC 19-0408 T |
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Paramirandina cymbiformis |
HKAS 112619 T |
– |
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Paramirandina guttulata |
HKAS 131771 T |
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Parazalerion indica |
CBS 125443 T |
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Pseudocorniculariella guizhouensis |
GZCC 19-0513 T |
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Pseudocoronospora hainanensis |
YMF 1.04517 T |
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Pseudomicrothyrium thailandicum |
MFLU 14-0286 T |
– |
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Pseudopenidiella gallaica |
CBS 121796 T |
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Pseudopenidiella piceae |
CBS 131453 T |
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Pseudosoloacrosporiella cryptomeriae |
CBS 148441 T |
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Scolecopeltidium menglaense |
MFLU 19-1009 T |
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Scolecopeltidium wangtianshuiense |
IFRD 9302 T |
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Spirosphaera beverwijkiana |
CBS 469.66 |
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Spirosphaera minuta |
CBS 476.66 |
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Sympodiella multiseptata |
CBS 566.71 T |
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Triscelophorus anisopteriodeus |
CGMCC 3.18978 T |
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Triscelophorus sinensis |
YMF 1.04065 T |
Saprobic on submerged decaying wood in a freshwater lake. Sexual morph: Undetermined. Asexual morph: Hyphomycetous (Fig.
Culture characteristics: Conidia germinating on PDA medium and germ tubes produced from both ends of conidium within 12 h. Colonies on PDA medium reaching 1–1.5 cm diam. after one month at room temperature (around 25°C) in dark, circular, with dense, velvety, pale brown to brown mycelium from above, brown from below.
Material examined: CHINA, Yunnan Province, Pu’er City, Jingdong Yi Autonomous County, Dujuanhu Lake,
“guttulata” refers to guttulate conidia of the species.
Paramirandina guttulata closely resemble P. aquatica and P. cymbiformis. However, they can be distinguished from each other by several key morphological characteristics. Paramirandina guttulata can be distinguished from P. aquatica by its gregarious, longer conidiophores (264–310 × 4.5–5 µm vs. 138–200 × 4.5–8 μm) and slightly larger conidia (33–38 × 6–7.5 µm vs. 23–34 × 4–7.5 μm) (
Phylogenetic analysis was conducted on combined LSU and ITS sequence data of Microthyriales taxa. Thirty-seven strains are included in the phylogenetic analysis and the combined aligment comprise 1356 characters including gaps (860 characters for LSU, 496 characters for ITS). Scolecopeltidium menglaense (MFLU 19–1009) and S. wangtianshuiense (IFRD 9302) were selected as outgroup taxa. Phylogenetic trees generated from Maximum Likelihood and Bayesian Inference analyses were similar in overall topologies (Fig.
Maximum Likelihood (ML) tree is based on combined LSU and ITS sequence data. Bootstrap support values with a ML greater than 70% and Bayesian posterior probabilities (PP) greater than 0.95 are given above the nodes, shown as “ML/PP”. The tree is rooted to Scolecopeltidium menglaense (MFLU 19–1009) and S. wangtianshuiense (IFRD 9302). New species are indicated in yellow and type strains are in bold.
Microthyriaceae is phylogenetically poorly studied with limited molecular sequence data available in public databases (
Paramirandina was recently introduced by
We would like to thank the National Natural Science Foundation of China (project ID: 32060005) and the Yunnan Fundamental Research Project (Grant No. 202201AW070001) for financial support. This work also supported by the Foundation of Yunnan Province Science and Technology Department (202305AM070003). Hong-Wei Shen thanks Sha Luan and Zheng-Quan Zhang for their help with the DNA extraction, PCR amplification and specimen preservation. The authors also extend their appreciation to the Researchers Supporting Project number (RSP2024R114), King Saud University, Riyadh, Saudi Arabia for funding this work. Dan-Feng Bao thanks the Postdoctoral Fellowship Program of CPSF (Grant No. GZC20240346) for financial support.