Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Valeria Trivellone (valeria.trivellone@gmail.com)
Academic editor: Quentin Groom
Received: 07 Jan 2019 | Accepted: 10 Feb 2019 | Published: 26 Feb 2019
© 2019 Valeria Trivellone
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Trivellone V (2019) An online global database of Hemiptera-Phytoplasma-Plant biological interactions. Biodiversity Data Journal 7: e32910. https://doi.org/10.3897/BDJ.7.e32910
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Phytoplasmas are phloem-limited plant pathogenic bacteria in the class Mollicutes transmitted by sap-feeding insect vectors of the Order Hemiptera. Vectors still have not yet been identified for about half of the 33 known phytoplasma groups and this has greatly hindered efforts to control the spread of diseases affecting important crops. Extensive gaps of knowledge on actual phytoplasma vectors and on the plant disease epidemiology prevent our understanding of the basic underlying biological mechanisms that facilitate interactions between insects, phytoplasmas and their host plants.
This paper presents a complete online database of Hemiptera-Phytoplasma-Plant (HPP) biological interactions worldwide, searchable via an online interface. The raw data are available through Zenodo at https://doi.org/10.5281/zenodo.2532738. The online database search interface was created using the 3I software (
biological relationships dataset, host plants, leafhoppers, planthoppers, plant pathogens
Phytoplasmas are a group of cell wall-less bacteria with small genome sizes (530-2220 kb) belonging to the class Mollicutes. They are obligate parasites of plant phloem tissue and are transmitted from plant to plant by sap-feeding insect vectors of the order Hemiptera (
The only known phytoplasma vectors are hemipteran insects belonging to the suborder Auchenorrhyncha (Fulgoromorpha and Cicadomorpha) and Sternorrhyncha (family Psyllidae). An insect acquires the phytoplasma from an infected plant, then the phytoplasma must overcome two major barriers (insect gut and salivary glands cells) in order to reach the saliva for subsequent introduction into another plants' phloem (
The main aim of the HPP database is to facilitate storage, retrieval and dissemination of data on Hemiptera-Phytoplasma-Plant interactions published in literature. It provides an up-to-date record of all pairwise associations recorded.
The entire database of HPP biological interactions (raw-HPP) is available for download as tab-delimited text at Zenodo at https://doi.org/10.5281/zenodo.2532738. The same data are accessible via an online search interface created using 3I (
At present, the database contains 1860 records of plant-phytoplasma pairwise associations and 968 records of insect-phytoplasma pairwise associations. Priority is given to the first record of association between a 16Sr phytoplasma group or subgroup and a host (plant or insect vector) reported for each country. The 3I-HPP search page includes three navigation links, one for Hemiptera, one for phytoplasmas and one for plants, to enable exploration of the taxonomic hierarchy and classification of all three major organismal groups included. A search may also be performed by entering a taxon name or other search term into the box provided. Each taxon name is displayed as a hyperlink to its own dynamically generated taxon webpage. Each taxon webpage provides an overview of the recorded interactions. An interaction record is defined as a taxon (subject of the taxon webpage) that interacts with another taxon (object cited in the overview of the investigated associations). The interactions are also displayed on a map as red dots on the geographic centroid of each country, state or province where that interaction has been documented. The place names are hyperlinked to literature references for each interaction record.
Data were compiled based on an extensive literature review and are categorised according to the type of relationship (see Traits coverage section) and literature records were included only if they were considered reliable. Data from published literature were considered not suitable for inclusion in the database if no molecular analysis or inoculation tests were applied to confirm the relationship between the phytoplasma and plant or insect. Papers reporting suspected vectors (without experimental evidence) or papers which inferred a phytoplasma as causing infection on plants, based only on observations of symptoms without any clear association with a phytoplasma group or subgroup, were also excluded. The papers were retrieved mainly using Web of Science and the Funk Agricultural, Consumer and Environmental Sciences Library at the University of Urbana-Champaign (Illinois, USA). The first bibliographic search gathered more than one thousand relevant studies which were individually screened and those considered to provide sufficient evidence (molecular detection of phytoplasmas in the tissues and/or transmission trials) to support or reject a species-specific plant-phytoplasma or insect-phytoplasma relationship were retained. According to the above-mentioned criteria, 829 studies were considered reliable and included in the database, while reports based only on anecdotal evidence were discarded. All papers considered have been deposited as PDF files in a shared data storage service provided by the Illinois Natural History Survey (University of Illinois).
The database provides global coverage of data on documented interactions between Hemiptera, phytoplasmas and plants. In Fig.
Distribution of the recorded Hemiptera- and Plant-Phytoplasma pairwise interactions (generated by http://trivellone.speciesfile.org/ web interface).
In the database, 324 taxa of Hemiptera, 44 'Candidatus Phytoplasma' species, 129 Phytoplasma strains and 649 plant species have been recorded.
The hemipteran species are all included in the Auchenorrhyncha and Sternorrhyncha suborders. For the first suborder, the classification follows the 3I World Auchenorrhyncha Database (
For phytoplasmas, the classification follows the rules established by the International Code of Nomenclature of Prokaryotes (
For species recorded in the phylum of Tracheophyta (vascular plants), the classification follows the Catalogue of Life (
Rank | Scientific Name | Common Name |
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order | Hemiptera | |
phylum | Tracheophyta | Vascular plant |
class | Mollicutes | Phytoplasma |
Individual records in the raw-HPP database consist of specific pairwise interactions detected in specific countries with their literature citations. In the database, the type of relationship with phytoplasma was defined by a positive detection in an insect body or plant tissues with a consequent assignment to the phytoplasma group or subgroup (e.g. 16SrI or 16SrI A) or to a not yet characterised phytoplasma. Investigated relationships that resulted in negative detection of a phytoplasma are reported as “not detected”. The record was included if the positive or negative detection was proven using microscopic and serology-based techniques, PCR targeting the 16S–23S rRNA genes, observed or virtual RFLP fingerprinting or DNA sequencing methods (
The 3I-HPP web interface summarises the history of the investigation for each insect and plant species. Therefore, the web interface includes 5 different categories for each taxon level, 3 for insects and 2 for plants. The category assigned to each taxon may change quickly as new investigations are carried out and new data are added to the database.
For each insect species (taxon page), one or more of the three possible categories were assigned, according to the available evidence about the capability to transmit the phytoplasma, as follows:
The relevant literature included in the database covers a time span of more than 120 years (from 1895 to date).
This is a database of Hemiptera-Phytoplasma-Plant (HPP) biological interactions worldwide. The database contains 1860 records of plant-phytoplasma pairwise associations and 968 records of insect-phytoplasma pairwise associations. Only the earliest reported record of each specific association between a 16Sr phytoplasma subgroup and a host (plant or insect vector) is reported for each country in the database. Duplicate records confirming the same association may be added in the future.
Column label | Column description |
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record_id | record identifier |
phytoplasma | Phytoplasma 16Sr groups and subgroups detected in the insect or plant host. The "not detected" entry means that phytoplasma was not detected in the host analysed and the "not characterised" entry means that it was not defined the 16Sr group for the detected phytoplasma as reported in the reference source |
host_group | The group (insect or plant) to which the host belongs |
host_family | Family name of the insect or plant host |
host_species | Species name of the insect or plant host |
country | Country where the biological association was detected or searched as reported in the reference source |
reference_id | Short reference identifier for the biological interaction |
full_reference | Full reference source for the biological interaction |
I would like to thank Christopher H. Dietrich and Dmitry A. Dmitriev for their valuable support and constant feedback on the dataset and data paper. I also thank Richard Flood for his kind help and technical support. This study was funded by U.S. National Science Foundation grant (DEB – 16-39601).