Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Mikhail N. Kozhin (mnk_umba@mail.ru)
Academic editor: Ivan Chadin
Received: 08 Oct 2020 | Accepted: 16 Nov 2020 | Published: 18 Nov 2020
© 2020 Mikhail Kozhin, Sampsa Lommi, Alexander Sennikov
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Kozhin MN, Lommi S, Sennikov AN (2020) Mobilisation of distributional data for vascular plants of Murmansk Region, Russia: Digital representation of the Flora of Murmansk Region. Biodiversity Data Journal 8: e59456. https://doi.org/10.3897/BDJ.8.e59456
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The present-day demand for digital availability of distributional data in biodiversity studies requires a special effort in assembling and editing the data otherwise scattered in paper literature and herbarium collections, which can be poorly accessible or little understood to present-day users and especially automatic data processors. Although the vascular plants of Murmansk Region (northern part of European Russia) are well studied and represented in publications, the accessibility of this knowledge is highly insufficient. The most widely known source is the Flora of Murmansk Region (published in 1953–1966), which remains in use because of its high original quality, detailed elaboration and completeness. We consider digitising this source to be of primary importance in biodiversity studies in the Arctic Region because of its point occurrence maps, which were based on the comprehensive inventory of contemporary herbarium collections.
We have compiled a dataset based on 554 printed point occurrence maps of species distributions published in the Flora of Murmansk Region, which includes 25,555 records of georeferenced plant occurrences that belong to 1,073 species and 5 hybrids. The occurrences are ultimately based on herbarium specimens kept at KPABG and LE, which were collected during 1837–1965. We estimate that these specimens represent ca. 60% of the current global herbarium holdings originated from Murmansk Region; this means that the dataset gives a fair representation of the regional flora.
angiosperms, ferns, gymnosperms, Kola Peninsula, lycophytes, mapping, plant distribution, Russian Lapland
Murmansk Region is a northern administrative territory in European Russia, which includes parts of two historical provinces: a large part of Lapland (represented by tundra and forest tundra) and northern Karelia (represented by northern boreal forest). This extensive territory (Fig.
The flora of vascular plants of Murmansk Region has been actively studied for 200 years and, therefore, the Region is among the best researched botanical territories in Russia. This situation is reflected in the Flora of Murmansk Region (
Despite the good state of the botanical knowledge on Murmansk Region in general, there are some significant shortcomings hindering its use. One is a complicated history of studies, which resulted in the splitting of efforts and the dispersal of herbarium collections. The flora of this territory was independently studied by Russian and Finnish botanists, who accumulated a vast knowledge that remains separate.
The Finnish botanical studies in the Kola Peninsula started with the private study of J. Fellman (
The Finnish herbarium collections from present-day Murmansk Region were deposited at the Botanical Museum, University of Helsinki (H). These collections were inventoried by Hjelt (
The Russian botanical exploration of the Kola Peninsula started very early, with the pioneering observations made during the Russian academic expeditions of 1768–1774 (
The Russian botanical collections were deposited mostly at the Komarov Botanical Institute (LE) and the Polar-Alpine Botanical Garden-Institute (KPABG).
These two streams of the botanical activity in Murmansk Region have always been separate. The resulting publications were taken into account by the other research side to a limited extent, and the collections have been kept and examined separately. This situation affected and handicapped all major synopses on the flora of Murmansk Region that appeared to date.
The second shortcoming of the Murmansk botanical data is its poor accessibility according to modern standards. There is no common bibliography and index for the published literature, and herbarium collections are divided between towns and countries and not databased.
Since 2016, a joint team of botanists of the Moscow State University and the University of Helsinki undertook a complete and detailed inventory of the flora of Murmansk Region, in order to bring together the Finnish and Russian data on a modern basis. Part of this effort is data inventory and mobilisation.
In the present contribution, we aim to mobilise the distributional data on vascular plants published in the Flora of Murmansk Region, which is the greatest botanical dataset from the territory that has ever been compiled. Its value rests on its complete coverage, both taxonomic and territorial, but also on the precision and quality of data collection which remains largely unsurpassed.
Due to the complexity of the original data and the significantly long timeframe of its production, certain insights into the history of the data collection and compilation is needed in order to make potential users better understand the structure and limitations of the dataset. For this reason, we provide a brief description of the data structure in connection with its history, as part of the documentation accompanying the dataset.
The present project aimed at digitising the data on distribution of vascular plants in Murmansk Region, Russia, which were published as printed point occurrence maps in the Flora of Murmansk Region (
History of preparation, structure, data origin: Flora of Murmansk Region became the main scientific task for the staff of the Polar-Alpine Botanical Garden-Institute (
The treatments written by Kuzeneva included taxonomically difficult groups of plants (several genera of Poaceae, Carex, Fabaceae, Caryophyllaceae, Rubiaceae etc.); these treatments are also most detailed and technically accurate. Shlyakov revised other most difficult groups, including Juncaceae, Salicaceae and Hieracium. His treatment of Salix was accepted in subsequent authoritative monographs (
The first estimations stated that the flora of Murmansk Region probably includes 700 species of vascular plants (
The structure of the Flora is traditional; it includes the main features of nomenclature, morphological descriptions, ecological data, distributional data and casual comments. The layout of the work was followed consistently from the first to the last volume of the Flora by all its contributors (
The nomenclature is limited to accepted names and main synonyms, with references to protologues, but excluding typifications. Standard references include Flora Rossica (
The information on the presence of a certain species in the territory was based largely on examination of herbarium specimens, except for some records derived solely from published sources (e.g.
Data on ecology were derived from herbarium specimens and personal observations. Distribution areas were derived from references. Economic importance and use were mentioned when available. Illustrations were an important part of the work. Original drawings (complete species plates, main drawings with separate details) were made mostly by N.Z. Semenova-Tian-Shanskaya (378 plates); after her death, the work was finished by A.V. Dombrovskaya (55 plates) and T.N. Shishlova (4 plates).
The original idea was proposed to include lists of specimens examined for each species (standardised to cite: locality, time, collector). This idea was found unrealistic, and ultimately the distributional data were limited to verbal characteristics and maps (
Maps are a very important part of the Flora; at that time, point occurrence distribution maps were extremely uncommon in regional treatments. As a rule, maps are provided for each species treated; the maps were compiled exclusively by E.G. Chernov, who had an extensive field experience in Murmansk Region and, at the same time, worked on the vegetation map of the territory (
Plant occurrences on the distribution maps were indicated by points; the points were based on herbarium specimens identified or seen by the authors of the corresponding taxonomic treatments. Due to this strict policy, distributional data published in
Original data collection: The Flora was largely based on herbarium collections, which were complemented by field observations for common plants. At that time, the main collections originated from Murmansk Region were deposited at the Komarov Botanical Institute (LE) and the Polar-Alpine Botanical Garden (KPABG).
The collection of the Komarov Botanical Institute was the largest at the time. Based on example groups, we estimate the number of its Murmansk specimens available to the authors of the Flora at about 35,000. This collection was established mostly by expeditions of the Russian Academy of Sciences, starting from the Russian Arctic expedition in 1837 under the command of Karl E. von Baer (
Besides the specimens collected by Russian collectors, the Herbarium of the Komarov Botanical Institute (LE) possessed important exsiccata from early Finnish collectors, N.I. Fellman’s Plantæ Arcticæ Exsiccatæ distributed by the author through the Botanical Museum, University of Helsinki (
Another large collection from Murmansk Region, which included a large number of specimens from historical and many recent expeditions, is kept at the Botanical Museum, University of Helsinki (
When the Flora was started, the young collections of the Polar-Alpine Botanical Garden were considered minor and complementary. When established, this Herbarium originally included collections from the Lapland Strict Nature Reserve, the Northern Research and Trade Expedition (now Arctic and Antarctic Research Institute), and early expeditions of the Academy of Sciences of the USSR to the Kola Peninsula. According to the first inventory, it numbered 2,000 specimens in 1934. Subsequently, the Herbarium received a set of specimens collected in botanical expeditions to the Kola Peninsula and also a number of duplicates transferred from LE and LECB. Since the local collections in Murmansk Region were very small and the Herbarium of the Komarov Botanical Institute was largely taxonomy-oriented and did not provide a proper coverage of the territory for understanding plant distributions in detail, the new floristic inventory required a massive effort to sample plants in less studied parts of the territory. Prior to the preparation of printed books, the Polar-Alpine Botanical Garden organised numerous expeditions, which continued during the whole period of the preparation. The expeditions thoroughly covered the western part of Lake Imandra with the Tuloma River basin, the northwesternmost parts of the territory (Pechenga District, which was ceded to the USSR by Finland in 1944), the Voronya River basin from Lovozero to Gavrilovo, Lovozero Mts. and the western part of the Lovozero Lake basin, basins of several other large rivers (Varzuga, Strelna, Ponoy), the Kola Bay, a large part of Tersky Coast etc. When the northern part of the former Finnish Kuusamo District was transferred from Karelian ASSR to Murmansk Region in 1955, this territory was visited by special expeditions in 1956–1957 to fill the resulting gap in the botanical information. Among the most frequent participants and active collectors in these expeditions were O.I. Kuzeneva, E.G. Chernov, N.I. Orlova, R.N. Shlyakov, N.A. Avrorin and N.Z. Semenova-Tian-Shanskaya (scientists) and L.R. Ponomareva (preparator). A.I. Poyarkova, the future editor and supervisor of the project, also collected many specimens which, however, were deposited at LE. Some other persons, who revised particular taxonomic groups for the Flora, travelled to more accessible areas for smaller collections (
As a result of this effort, the available collections had been rapidly increasing. After the work on the Flora had started, the number of specimens at KPABG reached 12,000 in 1950, whereas by the end of this work, in mid-1960s, it exceeded 40,000. This pace implies that due to the work on the Flora, the amount of collections at KPABG increased more than 20 times from the original figure of 2,000 (
In 1949, the Herbarium of Kandalaksha Strict Nature Reserve was established and acquired specimens from the White and Barents sea coasts. By the end of 1960s, the collection consisted of 2,000 specimens, many of which have been studied by Flora's authors.
Altogether, according to our estimations, over 75,000 herbarium specimens (from LE and KPABG and, to a minor extent, from H) were used in preparation of the Flora. It was a nearly complete coverage of collections available in the USSR (except for the Herbarium of the Leningrad State University, LECB and Moscow State University, MW); the foreign collections understandably were not covered because of political restrictions and financial limitations of the times. Among the Russian collections, LECB was excluded with the historical collections of K. Regel and R.F. Nyman (
Mapped records vs. present-day knowledge: Since the Flora had been completed, the amount of collections changed in the following way. The holdings of KPABG continued growing (although less actively) until 1990s. Some specimens have been added recently to H, which resulted from joint Finnish-Russian expeditions in post-Soviet times (
At present, we have the following estimations of the amount of herbarium specimens collected from Murmansk Region and kept in public collections (holdings exceeding 1,000 specimens): KPABG – 45,000, LE – 40,000, H – 25,000, MW – 15,000, KAND – 10,000, LECB – 3,000, OULU – 1,500 and TUR – 1,200. This means that the coverage of the Flora dataset (duplicates excluded) is ca. 60% of the present-day herbarium holdings available from the territory.
A total of 554 maps published in volumes 1–5 of the Flora of Murmansk Region (
The printed map projection was determined by the method of trial and error to Lambert Conformal Conic Projection using standard parallels at 68°N and 70°N and central meridian at 36°E. Maps were georeferenced using corners as control points. Corner points were determined separately for two sets of maps using a different design (basemap) in volumes 1–3 (x min: -311000, x max: 278000, y min: -252000, y max: 232000) vs. volumes 4–5 (x min: -311000, x max: 278000, y min: -234000, y max: 230000).
After calibrating the maps, plant record symbols were digitised one by one by mouse clicking using the WGS 84. Positions of records in some areas were slightly adjusted manually to match the landscape features when the printed base map was found distorted. As an example of this work, one original map (Fig.
Coordinate uncertainty was established considering the size of symbols, the accuracy of printed basemaps and the precision of old herbarium labels used for mapping. The level of accuracy was estimated at 5 km and used throughout the dataset.
Altogether, 25,555 records of plant occurrences have been extracted from the printed maps and databased (
This dataset was incorporated into the database of the project Flora of Russian Lapland (www.laplandflora.ru), which is maintained at the Moscow State University and uploaded to the Finnish Biodiversity Information Facility (FinBIF) (www.laji.fi) at the University of Helsinki.
Natural conditions and changing borders
The study area includes the territory of Murmansk Region of Russia, as delimited at the time when the Flora was being produced. Since the Region had been established in 1938, by merging Murmansk Area of Leningrad Region with Kandalaksha District of the Karelian ASSR, its limits expanded; this process also affected the territorial scope of the Flora during its preparation. Originally the Flora covered the territory, which included areas ceded by Finland to the USSR in 1940 and 1944 (Pechenga District) and also the territory of Jäniskoski-Niskakoski, which was exchanged with the USSR in 1947. These limits were used in volumes 1–2 of the Flora. The northern part of Salla District, ceded by Finland to the USSR in 1940, was transferred from the Karelian ASSR to Murmansk Region in 1953 and 1955; this transfer affected the territorial scope of the Flora and was reflected in its volumes 3–5.
As of 1955 and nowadays, the territory of Murmansk Region totals 144,900 km2 and is largely situated in the Kola Peninsula, bordering Norway, Finland and the Karelian Republic of Russia. The territory is bounded by the Barents Sea in the north and the White Sea in the south and east. It is fully situated within the Fennoscandian Shield, which is composed mostly of gneisses, granites and quartzites with nearly no limestone; bedrocks often being exposed along the sea shore. The territory is largely flat except for two small mountain massifs in the central part (Khibiny, Lovozero) and a few minor uplands in the western and south-western parts (Chuna-Tundra, Kandalaksha etc.). Rivers and lakes are abundant, the Ponoy River and Lake Imandra being the most significant examples. Islands are many along the shoreline.
This territory lies almost completely north of the Arctic Circle, and its climate is mostly subarctic with a minor influence of the polar climate along the northern coast and in the northern islands (
Present-day permanent human population is about 800,000 people, living in 16 cities and towns and over 100 villages. This area is a native territory of the Saami people, who are indigenous to the Arctic, and the Russian Pomor people who are its long-term residents, and is also home to many people resettled from other parts of Russia, largely in the 19th and 20th centuries in the course of the economic development of the territory. The 20th century was remarkable in the intensely growing level of urbanisation, mining, road construction, maritime transport and military activities, which led to a huge increase in the proportion of alien plants in the flora (
66.057 and 69.951 Latitude; 28.416 and 41.411 Longitude.
The dataset covers all taxonomic groups traditionally treated as vascular plants, i.e. Lycopodiophyta, Pteridophyta (incl. Pteridopsida and Equisetopsida) and Spermatophytes (incl. Magnoliophyta and Pinophyta), which were recorded and mapped as occurring in Murmansk Region in the Flora of Murmansk Region (
Taxonomic concept: As many other synoptic publications of the time, the Flora used the same taxonomic concept as employed in the Flora of the USSR (
The Flora was a critical taxonomic revision, not only an inventory of collections. Some treatments resulted in re-definition of species limits or in establishing new taxa. Many revisions, especially with taxonomic novelties, were published separately as background data. Examples of these are the treatments of Salix (
Creative Commons Attribution (CC-BY) 4.0 License
The occurrence of vascular plant species published on species distribution maps in the Flora of Murmansk Region (1953–1966).
Column label | Column description |
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occurrenceID | An identifier for the occurrence (unique). |
basisOfRecord | The specific nature of the data record. |
taxonRemarks | Comments or notes about the taxon or name [name as in the Flora of Murmansk Region]. |
scientificName | The binary scientific name (species name), without authorship and date information, or hybrid formula (for interspecific hybrids). |
taxonRank | The taxonomic rank of the mapped taxon, corresponding to the scientificName. |
genus | The full scientific name of the genus in which the taxon is classified. |
specificEpithet | The name of the first or species epithet of the scientificName. |
family | The full scientific name of the family in which the taxon is classified. |
eventDate | The interval during which the original data were obtained (herbarium specimens were collected). |
decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |
geodeticDatum | An EPSG code of the Spatial Reference System (SRS) [WGS 84, used consistently]. |
coordinateUncertaintyInMeters | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. |
georeferencedBy | A name of the person who determined the georeference (spatial representation) for the Location [Chernov, Evgeny Georgievich]. |
countryCode | The standard code for the country in which the Location occurs [RU, Russia]. |
stateProvince | The name of the next smaller administrative region than country (state, province, canton, department, region etc.) in which the Location occurs [Murmansk Oblast]. |
license | A legal document giving official permission to do something with the resource [Creative Commons Attribution (CC-BY) 4.0 License]. |
institutionID | An identifier for the institution having custody of the object(s) or information referred to in the record [Polar-Alpine Botanical Garden-Institute] |
institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record [KPABG]. |
bibliographicCitation | A bibliographic reference for the resource [Flora of Murmansk Region] as a statement indicating how this record should be cited (attributed) when used. |
DatasetName | The name identifying the data set from which the record was derived. |
language | A language of the resource. |
The work of M.N.Kozhin was supported by the Russian Science Foundation, grant #19-77-00025.
We are grateful to the staff of FinBIF (Kari Lahti, Esko Piirainen, Mikko Heikkinen, Eija-Leena Laiho) for hosting the dataset.