Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Fanny Lepareur (fanny.lepareur@mnhn.fr)
Academic editor: Quentin Groom
Received: 07 Jul 2021 | Accepted: 12 Sep 2021 | Published: 04 Mar 2022
© 2022 Fanny Lepareur, Mathieu Manceau, Yorick Reyjol, Julien Touroult, Solène Robert, Frédéric Vest, Arnaud Horellou, Laurent Poncet
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Lepareur F, Manceau M, Reyjol Y, Touroult J, Robert S, Vest F, Horellou A, Poncet L (2022) The nationwide ‘ZNIEFF’ inventory in France: an open dataset of more than one million species data in zones of high ecological value. Biodiversity Data Journal 10: e71222. https://doi.org/10.3897/BDJ.10.e71222
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In France, a ‘natural zone of ecological, faunistic or floristic value’ (Zone Naturelle d'Intérêt Écologique, Faunistique et Floristique - ZNIEFF) is a natural area, regionally known for its remarkable ecological characteristics. The ZNIEFF inventory is a naturalist and scientific survey programme launched in 1982 by the Ecology Ministry, with support from the French National Museum of Natural History (MNHN).
This paper describes the ZNIEFF national dataset, which comprises 1,013,725 data for various animal (38%), plant (59%) and fungal (2%) species in terrestrial and marine zones (May 2020). A total of 19,842 sites throughout continental France. as well as in the overseas Departments and territories (Guadeloupe, Martinique, Mayotte, La Réunion, French Guiana, Saint-Martin, Saint-Barthélemy and Saint-Pierre-et-Miquelon), are included in the ZNIEFF dataset (May 2020). This dataset is now available in open access.
All data were collected by skilled naturalists using professional protocols over almost 40 years. They consist mainly of observations of rare, threatened or endemic species, all validated by regional experts. Data are updated twice a year after national validation in both national (INPN-OpenObs) and global (GBIF) biodiversity web platforms. Some of the observed species, the so-called ‘trigger species’ or ‘determinant’ species, are of central interest for a site to be designated a ZNIEFF (zone of high ecological value). This concerns more than 35,000 taxa, mainly angiosperms, insects, fungi, birds and fish.
key biodiversity areas, trigger species, natural heritage survey, terrestrial and marine biodiversity
In France, a ‘natural zone of ecological, faunistic or floristic value’ (Zone Naturelle d'Intérêt Écologique, Faunistique et Floristique - ZNIEFF) is a natural area, regionally known for its remarkable ecological characteristics (
The ZNIEFF inventory is included in the National Inventory of Natural Heritage (INPN) (
The inclusion of a site in the ZNIEFF inventory is based on the presence of a species or associations of species of high ecological value (named ‘determinant species’ in the ZNIEFF terminology). The presence of at least one determinant species makes it possible to create a ZNIEFF. The data on remarkable species and habitats in the area are collected, analysed and synthesised (
The Regional Scientific Council for Natural Heritage (CSRPN) scientifically validates the naturalist surveys (sites and species) in each administrative region in close relationship with the regional services of the Ministry of Ecology and their scientific secretariat ‘ZNIEFF’, while the French National Museum of Natural History is in charge of the national consistency.
A ZNIEFF is not a ‘protected area’ per se, but rather a survey of naturalistic knowledge on specific sites known to shelter remarkable species and/or characterised by remarkable environmental features (e.g. a moor on serpentine). The ZNIEFF inventory is central for prioritising issues of natural heritage, defining the national biodiversity strategy and its regional sub-strategies, creating protected areas and for generating new knowledge. It has been one of the most important items when defining the French National Strategy for the Creation of Protected Areas (SCAP). In 1993, the ZNIEFF inventory facilitated the implementation of the European Habitats Directive concerning the conservation of natural and semi-natural habitats, as well as wild fauna and flora, enabling the constitution of an operational Natura 2000 network of sites. Finally, it constitutes a decision-making tool and is frequently used for environmental studies related to land planning. Generally speaking, the ZNIEFF inventory has been one of the main factors in collecting and gathering naturalist's knowledge on the national level for almost 40 years.
The notion of ‘determinance’ is the cornerstone of the ZNIEFF inventory and literally means ‘which determines the value and justifies the choice of the geographic area’. Each ZNIEFF must necessarily contain at least one ‘determinant’ species (also called ‘trigger’ species in scientific literature) to be considered as such. The determining characteristic is the intrinsic value of the species (e.g. localised, threatened on the regional, national or international level, endemic, at the limit of the range etc.), combined with the particular conditions of the site (notably, the importance of the species population in the region with respect to its presence in other regions and its global geographic distribution). In addition to these determinant species, the ZNIEFF inventory also takes into account determinant habitats, which contribute to the selection of the area on their own value or that of the species they shelter. Data related to other (non-determinant) species are also collected during field surveys and generally included in the dataset, given that it is useful for understanding the global ecological functioning of the ZNIEFF or to anticipate global anthropogenic threats or more local impacts (e.g. extension of the range of species due to climate change or urbanisation). Only data concerning species (not habitats) will be presented in this datapaper, as habitat data do not yet benefit from viewing and downloading tools at the national level.
There is a particular case of species with ‘confidential distribution’. This concerns a limited number of species in a given region that are particularly ‘sensitive’, i.e. subject to harmful human activity and for which the availability of data is likely to increase the likelihood of the harmful activity occurring (
In addition to this notion of confidential data specific to the ZNIEFF programme, there is also a national programme on 'sensitive data'. This programme is recent and aims to harmonise and implement blurring of what is called sensitive/confidential/restricted data in some French datasets, including the ZNIEFF inventory. Data considered sensitive can be blurred more widely than a zone, i.e. to the Municipality, the Department, a grid cell etc. This is mentioned in the 'informationWithheld' and 'dataGeneralizations' fields of the ZNIEFF dataset.
In order to guarantee the consistency of the information, data are collected using a common framework (
The Ecology Ministry coordinates the regional services and provides financial support for the annual operation of the ZNIEFF programme.
Sampling is focused on areas of high biodiversity identified at the regional scale. These zones (19,842 registered as ZNIEFFs on May 2020; Table
Number of sites registered in the ZNIEFF inventory according to the different categories.
Type I |
Type II |
Total |
|
Continental ZNIEFFs |
17,368 |
2,248 |
19,616 |
Marine ZNIEFFs |
132 |
94 |
226 |
Total |
17,500 |
2,342 |
19,842 |
All figures given in this publication, including illustrations, were calculated in May 2020.
The dataset presented in this publication is managed by UMS PatriNat (OFB/CNRS/MNHN), the unit also responsible for the National Inventory of Natural Heritage (INPN). The INPN is part of the SINP, i.e. the French national information system for sharing observational data on biodiversity. This information system guarantees the traceability of data, authorship and normalised standards of data and metadata.
Before integration and dissemination on the INPN website, a series of validation checks are systematically performed (
The INPN provides the data directly to the GBIF portal in order to make the data available at the international level.
All taxa are identified by experienced naturalists prior to the validation by the regional scientific councils (CSRPN). The dataset producers are responsible for the reliability of the identification.
The inventory covers the marine, terrestrial and freshwater environments of all administrative regions of continental France and its overseas territories (five overseas Departments: Guadeloupe, Martinique, Mayotte, La Réunion, French Guiana and three overseas territories: Saint-Martin, Saint-Barthélemy and Saint-Pierre-et-Miquelon) (Fig.
The description and mapping of the area are specified by the ZNIEFF method and the geographic boundaries of each ZNIEFF must have a scientific basis (ecological, consistent with the heritage and functional value of the area, with particular reference to criteria for the distribution of habitats, vegetation, geomorphology, land use etc.).
Maps can be visualised on the INPN website (https://inpn.mnhn.fr/viewer-carto/espaces). The map of each ZNIEFF can be accessed independently (e.g. https://inpn.mnhn.fr/zone/znieff/930012348).
Geographic data can be downloaded in the form of GIS layers (three available formats) and web services (WMS and WFS):
Type I – continental ZNIEFF: https://inpn.mnhn.fr/telechargement/cartes-et-information-geographique/inv/znieff1
Type II – continental ZNIEFF: https://inpn.mnhn.fr/telechargement/cartes-et-information-geographique/inv/znieff2
Type I – marine ZNIEFF: https://inpn.mnhn.fr/telechargement/cartes-et-information-geographique/inv/znieff1_mer
Type II – marine ZNIEFF: https://inpn.mnhn.fr/telechargement/cartes-et-information-geographique/inv/znieff2_mer
The ZNIEFF inventory focuses on all fauna, flora and fungal taxa, with a special emphasis on rare, threatened or endemic taxa of the taxonomic groups which are best studied by naturalists. The considered taxa are those considered indigenous to French territories and they are examined on the specific and infra-specific levels (
The taxonomy complies with the standards of the national repository TAXREF for the fauna, flora and fungi of continental France and the overseas Departments and territories (
More than 35,000 taxa (species and subspecies) have been inventoried in ZNIEFFs to date, which represents approximately 19% of the number of species currently listed in France (
Taxonomic coverage of the ZNIEFF inventory (species and subspecies) per ‘taxonomic’ groups arranged in alphabetical order. The Table presents the number of records, the total number taxa, the number of endemic and sub-endemic taxa and the number of taxa assessed as threatened on the national level according to the French IUCN Red List (threatened categories for IUCN: VU, EN and CR).
‘Taxonomic’ groups |
Number of records |
Total number of taxa |
Number of endemic and sub-endemic taxa (% of the total number of taxa is given in parentheses) |
Number of threatened taxa (% of the total number of taxa is given in parentheses) |
Animalia: |
387,441 |
15,286 |
||
Amphibians |
14,021 |
195 |
31 (15.9%) |
13 (6.7%) |
Annelids |
1,276 |
242 |
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Arachnids |
8,766 |
875 |
24 (2.7%) |
|
Ascidians |
205 |
49 |
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Birds |
153,047 |
1,503 |
44 (2.9%) |
261 (17.4%) |
Bivalves |
1,444 |
208 |
1 (0.5%) |
|
Cephalopods |
49 |
9 |
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Crustaceans |
3,990 |
607 |
99 (16.3%) |
45 (7.4%) |
Entognaths |
369 |
98 |
73 (74.5%) |
|
Fish |
13,567 |
1,128 |
41 (3.6%) |
28 (2.5%) |
Gastropods |
5,489 |
575 |
85 (14.8%) |
|
Hydrozoans |
289 |
70 |
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Insects |
144,237 |
8,823 |
412 (4.7%) |
52 (0.6%) |
Mammals |
29,700 |
409 |
31 (7.6%) |
24 (5.9%) |
Myriapods |
601 |
61 |
5 (8.2%) |
|
Nemerteans |
7 |
3 |
||
Octocoralliarids |
363 |
21 |
||
Plathelminthes |
33 |
13 |
3 (23.1%) |
|
Pycnogonids |
13 |
6 |
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Reptiles |
8,564 |
238 |
24 (10.1%) |
28 (11.8%) |
Scleractinian corals |
1,411 |
153 |
14 (9.2%) |
|
Plantae: |
600,220 |
15,616 |
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Angiosperms |
559,081 |
13,312 |
1,058 (7.9%) |
770 (5.8%) |
Chlorophytes and Charophytes |
574 |
122 |
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Gymnosperms |
3,071 |
89 |
2 (2.2%) |
|
Hepatics and Hornworts |
2,546 |
254 |
||
Mosses |
12,017 |
809 |
1 (0.1%) |
|
Pteridophytes |
21,291 |
765 |
64 (8.4%) |
120 (15.7%) |
Red algae |
1,640 |
265 |
||
Fungi: |
18,877 |
3,862 |
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Fungus (without Lichens) |
15,149 |
3,033 |
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Lichens |
3,728 |
829 |
||
Chromista: |
870 |
131 |
||
Diatoms |
19 |
19 |
||
Ochrophytes |
851 |
112 |
||
Supra-specific taxa |
6,317 |
889 |
||
TOTAL |
1,013,725 |
35,784 |
Three taxonomic groups have more than 100,000 records, namely angiosperms (559,081), birds (153,047) and insects (144,237) (Fig.
The data span the years 1757 to 2019.
The ZNIEFF inventory was officially launched in 1982, but data prior to this date have been taken into account to justify the ecological value of some areas. There were two inventory phases (i.e. ‘generations’ according to the ZNIEFF terminology). The first generation took place between 1982 and 1995, while the second generation lasted from 1995 to 2014 (
The effort put into field surveys and data collection in regional information systems was very important until 2010 (Fig.
This project is licensed under a Creative Commons Attribution 4.0 International Licence (CC BY 4.0).
The description of the ZNIEFF dataset for species is also available on the INPN website (https://inpn.mnhn.fr/espece/jeudonnees/7907). The ZNIEFF dataset can be downloaded from the INPN-OpenObs portal and downloaded from the GBIF portal (data as csv files or a Darwin Core Archive). It is important to mention that the X, Y coordinates correspond with the centroid of the zones.
Column label | Column description |
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id | The unique identifier of the Occurrence. |
modified | The most recent date on which the resource was changed (YYYY). |
language | In English and French (en | fr). |
datasetID | The identifier for the dataset. |
institutionCode | The name in use by the institution having custody of the information referred to in the record. |
basisOfRecord | The specific nature of the data record. |
informationWithheld | The field indicates whether the taxon is regionally sensitive, i.e. the data should not be disseminated specifically to avoid harm to the taxon. This is a different level of sensitivity from that explained in the General description of the datapaper. This regional sensitivity implies blurred data. |
dataGeneralizations | When the data is considered sensitive (cf. informationWithheld), this field indicates the blurring applied to the data. |
occurrenceID | The unique identifier of the Occurrence (=id). |
occurrenceRemarks | Indication if the species is determinant for this ZNIEFF. The data field is empty otherwise. |
recordedBy | A list of names of people, groups, bibliographic reference or organisations responsible for recording the original Occurrence. This list is not standardised due to the old existence of this programme. |
occurrenceStatus | A statement about the presence of a taxon in a ZNIEFF. |
associatedReferences | The identifier and the full name of the ZNIEFF in which the taxon occurs. |
eventID | The identifier of the ZNIEFF in which the taxon occurs. |
eventDate | The year or the interval when the observation of the taxon was recorded (YYYY or YYYY/YYYY). |
country | The name of the country in which the Location occurs. |
countryCode | The standard code for the field stateProvince in which the Location occurs. |
stateProvince | The name of the French territories (Metropolitan France and each overseas territories) in which the Location occurs. |
county | The standard code of French Department in which the ZNIEFF occurs. |
municipality | The full name and the postal code of the Municipality in which the ZNIEFF occurs (Postal code|Name). |
locationRemarks | When the data is considered sensitive (cf. informationWithheld), this field indicates that the location has been blurred. The decimalLatitude and decimalLongitude fields are then the centroid of the nearest grid cell. |
decimalLatitude | The geographic latitude of the centroid of the ZNIEFF (in decimal degrees, using the spatial reference system WGS84). |
decimalLongitude | The geographic longitude of the centroid of the ZNIEFF (in decimal degrees, using the spatial reference system WGS84). |
coordinateUncertaintyInMetres | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. |
identificationVerificationStatus | Indicator of the extent to which the taxonomic identification has been verified to be correct. From a scientific point of view, the taxonomic identification has been verified, but it still lacks technical controls. |
taxonID | The unique identifier for the taxon (scientificName) according to TAXREF (=CD_NOM in TAXREF). |
scientificName | The full scientific name, with authorship and date information. |
nameAccordingTo | According to the national repository TAXREF for the fauna, flora and fungi of continental France and the overseas Departments and territories (with the last version used). |
kingdom | The full scientific name of the kingdom in which the taxon is classified. |
class | The full scientific name of the class in which the taxon is classified. |
order | The full scientific name of the order in which the taxon is classified. |
family | The full scientific name of the family in which the taxon is classified. |
When using the data from the ZNIEFF inventory, synthesised species data (see Data Resources) should be associated with the perimeters of the zones (see the Geographic coverage section above). The X, Y coordinates in the dataset, downloadable from the GBIF portal, correspond with the centroids of the zones. It is, therefore, necessary to link the synthesised data and the perimeters with the common field, which is the identifier of the ZNIEFF ('Event ID' in the dataset and 'NM_SFFZN' in GIS files).
These data can be used for all types of analyses and studies on key biodiversity areas, protected areas and ecological networks. They can also be used for maps of rare species, distribution atlases etc. These data alone are not suitable for precise monitoring of populations nor for establishing temporal trends of distribution.
Caution is advised in that there may be differences in inventory intensity and species groups studied depending on the region. Comparison of species occurrence (and even more so of richness) amongst sites is more relevant within a given region and should be considered with caution at a national level.
First of all, we would like to very sincerely thank all the naturalists who have contributed directly or indirectly to the ZNIEFF programme for decades. They include professional and amateur naturalists, associations for nature studies and protection, public institutions, contractors (private sector), learned societies etc. We also wish to thank DREAL/DEAL/DRIEAT IDF/DAF, ZNIEFF managers on the regional level and all the Regional Scientific Councils (CSRPN) whose role is essential to guarantee the scientific validity of the ZNIEFFs. The Ecology Ministry is here thanked for its support and monitoring for almost 40 years. Finally, we thank Jean Ichter, who helped on the data quality section and Mathieu Clair, Nicolas Boulain, Benjamin Ledentec, Sophie Pamerlon and Sylvain Morin from the “Data” and “IT applications” teams of UMS PatriNat (OFB/CNRS/MNHN) and GBIF France.