Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Eva Lieungh (eva.lieungh@nhm.uio.no)
Academic editor: Jörg Holetschek
Received: 25 Aug 2022 | Accepted: 24 Oct 2022 | Published: 17 Nov 2022
© 2022 Eva Lieungh, Kristina Bjureke, Marianne Evju, Rukaya Johaadien, Siri Olsen, Olav Skarpaas, Odd Egil Stabbetorp, Anders Wollan
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Lieungh E, Bjureke K, Evju M, Johaadien RS, Olsen SL, Skarpaas O, Stabbetorp OE, Wollan AK (2022) Presence-absence of plant habitat specialists in 15 patches of dry calcareous grassland. Biodiversity Data Journal 10: e94057. https://doi.org/10.3897/BDJ.10.e94057
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Dry grasslands on calcareous bedrock in warm climates around the Oslo Fjord are naturally fragmented biodiversity hotspots. This habitat geographically coincides with the most densely populated area of Norway. Many habitat specialists, along with the habitat itself, are red-listed because of land-use change, forest encroachment, and invasive species that cause habitat loss and greater isolation of remaining patches. To ensure effective conservation, data on species presences and absences are necessary to quantify states, changes, and extinction risks in specific populations and habitat patches.
We present presence-absence data of 49 vascular plant species in 15 patches of dry calcareous grassland habitat, surveyed in 2009, 2019, and in 2020. The species are considered to be habitat specialists and, thus, unlikely to occur between the patches.
sampling-event, vascular plants, specialist species, presence-absence data, calcareous grassland, habitat patch, GBIF
Norway’s most densely populated area coincides geographically with a national biodiversity hotspot. Warm climates and calcareous bedrock have created dry grasslands in places with shallow soil and historical land-use practices. These grasslands are naturally fragmented, but are now Red-listed along with several habitat specialists that depend on them. Land-use change, forest encroachment, and invasive species cause habitat loss and greater isolation of remaining patches (
We present presence-absence data for 49 vascular plant species in 15 mapped patches of dry calcareous grassland habitat surveyed in three growing seasons. The data combine surveys from 2009, 2019, and 2020. The 2019 and 2020 surveys are repeated surveys of a subset of data described in previous publications (
Dry calcareous grasslands are characterised by drought-tolerant grasses, forbs, shrubs and occasionally trees. Though originally defined as lacking tree cover, the borders are transient between naturally treeless and potentially forested semi-natural habitats kept open by grazing. The surveyed habitat patches also include semi-natural vegetation where dry pine forest has potential to grow. Interannual variability plays an important role, as occasional intense droughts keep competitive vegetation away from the driest patches. For example, the summer of 2018 was exceptionally dry and hot, and visibly impacted the vegetation the following years. Many drought-intolerant plants and young trees died, and some of the habitat specialists came back in full vigour the next season.
Some patches of dry calcareous grasslands, like those presented here, are protected inside nature reserves. A combination of appropriate theory and good data can provide insights into extinction risk scenarios and guide choices between alternative conservation strategies. Ecological theory, such as island biogeography and metapopulation and metacommunity theory, can provide hypotheses and general predictions. Good data, including absence records, are necessary to test these hypotheses and provide insight into specific populations and habitat patches. The present dataset was collected to study hypotheses of turnover and persistence in the metapopulations of habitat specialists and to quantify states and changes in a habitat of considerable conservation interest. As all the patches are on the same island, they form a closed system where species may persist, become extinct, or be colonised from neighbouring patches or patches on different islands. The dataset builds on a study design set up to monitor this hotspot habitat (
The data from 2009 are a subset of the ARKO project data (
Dynamic distribution modelling
Eva Lieungh
Natural History Museum, University of Oslo, the Norwegian Ministry of Education and Research
Field surveys were carried out in 2009, 2019, and 2020. All vascular plant species inside the 15 habitat patches were recorded in 2009 and 2019, but only the habitat specialists' occurrences are reported in this dataset. In 2020, occurrence was only recorded for the 49 habitat specialists.
Fieldwork in 2009 was carried out by KB, OES, and AKW, all experienced botanists. Potential locations of dry calcareous grassland had been identified by aerial photos and distribution modelling. The patch locations were then visited by the fieldwork team and either discarded or confirmed and delimited. Polygon coordinate points were recorded using a handheld GPS with an estimated accuracy of 1-10 m. All three in the team looked for species in the same patch, one being in charge of writing down occurrences. When no new species were found, all three tried to find one more species each before declaring the list complete. Species lists per patch were noted in a notebook. Fieldwork in the 2019 and 2020 surveys was carried out by EL alone. Patches were found using a map with semi-transparent polygons over a recent aerial photo. Species presences were recorded in a spreadsheet on a smartphone. Patches were inventoried by carefully walking back and forth across the polygon to cover the entire area. EL took pictures of each patch. EL also took pictures of uncertain species with the iNaturalist (
We took several steps to quality-check the data. Each occurrence was evaluated manually to ensure the highest possible quality of data: after data collection was complete in 2019 and 2020, each observation was checked against the data from the previous year(s), occurrences in GBIF, and pictures taken during fieldwork. Some uncertainty was resolved using pictures stored in iNaturalist, where pictures were stored for individual plants along with their coordinates and other metadata. Some of these pictures were sent to OS, SLO and other experts to confirm uncertain species identifications. Additional trips to Gressholmen by EL along with SLO were carried out in September 2019, and alone in June 2020, to check uncertain presences and suspected false absences.
For 2009 and 2019, there are more data available than described here. These data include all vascular plant species, not just the specialists, and some additional descriptive variables for each patch.
In spite of quality control, some uncertainty remains. Delineating polygons inevitably involves uncertainties, and GPS polygon boundaries were not physically delimited in the field. In addition, changes in patch size may have occurred between 2009 and 2019, due to regrowth or other factors. To a lesser degree, this is also an issue between the 2019 and 2020 surveys. False absences may occur in the dataset, which is common in field surveys (
Calcareous grasslands occur naturally fragmented on shallow soils by the Oslo Fjord, mainly on exposed and/or grazed Cambrian–Silurian marine sedimentary rock. The climate is relatively warm, with an annual temperature of 5.7°C (
The species were recorded in 15 patches of dry calcareous grassland on Gressholmen Island, situated in the inner Oslo fjord (Fig.
Humans have shaped and impacted the habitats on Gressholmen, probably for as long as the Oslo fjord has been settled. Today, the Island is artificially connected to two other Islands, Heggholmen and Rambergøya. Most of this Island trio is protected as nature reserves, but has previously housed a shooting range, an airport, a soap factory with connected houses, and a paint factory. It has likely been grazed by domestic animals while the Island was inhabited. From the 1970s until its eradication in 2007, a large rabbit population occupied the Islands and grazed the vegetation heavily. Several summerhouses, a small harbour, and a restaurant are still in use and the Islands are a popular destination for day-trips in the summer.
59.882 and 59.887 Latitude; 10.717 and 10.727 Longitude.
The dataset encompasses 49 habitat specialist vascular plant species. The list of habitat specialist species was developed, based on flora information of habitat requirements and distributional range, expert opinion, and field observations from a large number of polygons (see
Rank | Scientific Name | Common Name |
---|---|---|
species | Acinos arvensis (Lam.) Dandy | Bakkemynte |
species | Androsace septentrionalis L. | Smånøkkel |
species | Arabis hirsuta (L.) Scop. | Bergskrinneblom |
species | Aria edulis (Willd.) M.Roem. | Sølvasal |
species | Asplenium ruta-muraria L. | Murburkne |
species | Avenula pratensis (L.) Dumort. | Enghavre |
species | Carex caryophyllea Latourr. | Vårstarr |
species | Carlina vulgaris L. | Stjernetistel |
species | Centaurea scabiosa L. | Fagerknoppurt |
species | Cerastium semidecandrum L. | Vårarve |
species | Cotoneaster niger (Fr.) Fr. | Svartmispel |
species | Cotoneaster scandinavicus B.Hylmö | Dvergmispel |
species | Cynoglossum officinale L. | Hundetunge |
species | Draba verna L. | Vårrublom |
species | Dracocephalum ruyschiana L. | Dragehode |
species | Echium vulgare L. | Ormehode |
species | Epipactis atrorubens (Hoffm.) Besser | Rødflangre |
species | Erysimum virgatum Roth | Berggull |
species | Filipendula vulgaris Moench | Knollmjødurt |
species | Fragaria viridis Duchesne | Nakkebær |
species | Geranium sanguineum L. | Blodstorkenebb |
species | Hypochaeris maculata L. | Flekkgrisøre |
species | Inula salicina L. | Krattalant |
species | Lappula squarrosa (Retz.) Dumort. | Sprikepiggfrø |
species | Lepidium campestre (L.) W.T.Aiton | Markkarse |
species | Ligustrum vulgare L. | Liguster |
species | Linum catharticum L. | Vill-lin |
species | Lithospermum officinale L. | Legesteinfrø |
species | Myosotis ramosissima Rochel | Bakkeforglemmegei |
species | Myosotis stricta Link ex Roem. & Schult. | Dvergforglemmegei |
species | Myosurus minimus L. | Muserumpe |
species | Odontites litoralis (Fr.) Fr. | Strandrødtopp |
species | Phleum phleoides (L.) H.Karst. | Smaltimotei |
variety | Poa alpina var. alpina | Frøfjellrapp |
species | Poa compressa L. | Flatrapp |
species | Polygonatum odoratum (Mill.) Druce | Kantkonvall |
species | Potentilla crantzii (Crantz) Beck ex Fritsch | Flekkmure |
species | Rhamnus cathartica L. | Geitved |
species | Rosa majalis Herrm. | Kanelrose |
species | Saxifraga granulata L. | Nyresildre |
species | Saxifraga osloensis Knaben | Oslosildre |
species | Saxifraga tridactylites L. | Trefingersildre |
species | Scleranthus perennis L. | Flerårsknavel |
species | Seseli libanotis (L.) W.D.J.Koch | Hjorterot |
species | Silene nutans L. | Nikkesmelle |
species | Thymus pulegioides L. | Bakketimian |
species | Veronica arvensis L. | Bakkeveronika |
species | Veronica spicata L. | Aksveronika |
species | Woodsia alpina (Bolton) Gray | Fjell-lodnebregne |
07/07/2009 through 10/07/2009, 01/07/2019 through 16/08/2019, 04/06/2020 through 22/06/2020.
This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.
We present three years of presence-absence data of 49 vascular plant species in 15 patches of dry calcareous grassland habitat (
Column label | Column description |
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id | A unique identification number for each survey event per habitat patch, i.e. patch number one has three ids for each of the three years it was surveyed. |
eventID | The same as id: unique identification number for each survey event per habitat patch. |
samplingProtocol | A short description of the methods or protocols used during a sampling Event. |
sampleSizeValue | A numeric value for a measurement of the size (time duration, length, area, or volume) of a sample in a sampling event. |
sampleSizeUnit | The unit of measurement of the size (time duration, length, area, or volume) of a sample in a sampling event. Here: Area of the habitat patch in square metres |
eventDate | The range of dates for the sampling event (survey of one patch in one year), given as year-month-startDay/endDay following the ISO 8601 date-time standard. Exact dates and times were not recorded, but we did record the start and end dates of fieldwork. One patch was surveyed within a day in the given date range. |
startDayOfYear | The earliest integer day of the year on which the sampling event (survey) occurred (1 for 1 January, 365 for 31 December). |
endDayOfYear | The latest integer day of the year on which the sampling event (survey) occurred (1 for 1 January, 365 for 31 December). |
year | The year the habitat patch was surveyed. |
locationID | Habitat patch number, given as patch-1, ..., patch-15. To connect back to data from the ARKO project, these patches correspond to polygons 35_1, ..., 35_15. |
countryCode | Two-letter ISO 3166-1-alpha-2 country code. Here NO for Norway. |
locationRemarks | Patch-year combination, where p1 corresponds to patch 1 and so on. |
decimalLatitude | Latitude, in decimal degrees, of habitat patch centroid. |
decimalLongitude | Longitude, in decimal degrees, of habitat patch centroid. |
geodeticDatum | The spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. EPSG:4326 is the EPSG codde for WGS84. |
coordinateUncertaintyInMeters | The longest distance, in metres, from patch centroid coordinates to the patch polygon boundary. This measure overestimates uncertainty for most occurrences. |
footprintWKT | A Well-Known Text (WKT) representation of the shape (footprint, geometry) of the patches, defining the Locations. These footprintWKTs are readable by geographic information systems (GIS) as vector polygon features. |
footprintSRS | The geodetic datum or spatial reference system (SRS) of the footprintWKT. EPSG:4326 is the same as WGS84. |
The second data file, occurrence.txt, describes the species occurrences in three years of surveys, the last of which are re-surveys of a subset described in previous publications (
The occurrence.txt file has 2206 rows, of which 999 are presence and 1206 absence observations, plus one header row.
Column label | Column description |
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id | A unique identification number for each observation, i.e. on observed presence or absence of a species in a patch in a year. |
basisOfRecord | The specific nature of the data record, given by a standard label of one of the Darwin Core classes: here, human observation. |
occurrenceID | A persistent, globally unique identifier for the Occurrence (as opposed to a particular digital record of the occurrence). |
recordedBy | Name(s) of the observer who recorded the occurrence. |
recordedByID | A unique identifier of the observer (in the recordedBy column), here their OrcID number. |
organismQuantity | A number or enumeration value for the quantity of organisms. Here, either 0 for absent or "at least one" for present. |
organismQuantityType | The type of quantification system used for the quantity of organisms. Here, number of indivuduals. |
occurrenceStatus | A statement about the presence or absence of the taxon at the specified patch location and time. |
occurrenceRemarks | A patch-year combination, where habitat patch 1 is shortened to p1 and so on, specifying the location and time of the occurrence. |
eventID | A unique identifier for each survey event, to connect the occurrences to the sampling events in the event.txt file. There is one eventID per habitat patch per year, i.e. there are three eventIDs for patch 1 because it was surveyed three times. |
year | The year the occurrence was recorded. |
scientificName | The scientific name of the recorded taxon, in Latin and including author name, mapped to the GBIF taxonomic backbone from the closest match in the Norwegian Species Nomenclature Database. |
kingdom | The full scientific name of the kingdom in which the taxon is classified, here Plantae. |
taxonRank | The taxonomic rank of the most specific name in the scientificName, for exampe, species or variety. Most of the occurrences were recorded on species level. |
vernacularName | Common name in Norwegian. Provides a link back to the original data collection sheet and to the Norwegian Species Nomenclature Database. |
Additional data can be found on GitHub: https://github.com/evalieungh/gressholmen_data
Thanks to GBIF Norway for helping to publish the data and to all involved in the ARKO project where the 2009 locations were found and the original data created.
EL wrote the manuscript, collected the data from 2019 and 2020, formatted the data and wrote the metadata. KB, OES and AKW collected the 2009 data. RSJ formatted the data and added Darwin Core fields. ME, OS and SLO contributed to quality assurance and sampling design. OS and SLO supervised EL. All authors commented on and critically reviewed the manuscript.