Biodiversity Data Journal :
Data Paper (Biosciences)
|
Corresponding author: Cristina Di Muri (cristina.dimuri@iret.cnr.it), Giorgio Mancinelli (giorgio.mancinelli@unisalento.it)
Academic editor: Christos Arvanitidis
Received: 02 Sep 2022 | Accepted: 09 Oct 2022 | Published: 20 Oct 2022
© 2022 Cristina Di Muri, Paloma Alcorlo, Roberta Bardelli, Jordi Catalan, Esperança Gacia, Maria Teresa Guerra, Ilaria Rosati, David Soto, Salvatrice Vizzini, Giorgio Mancinelli
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Di Muri C, Alcorlo P, Bardelli R, Catalan J, Gacia E, Guerra MT, Rosati I, Soto DX, Vizzini S, Mancinelli G (2022) Individual and population-scale carbon and nitrogen isotopic values of Procambarus clarkii in invaded freshwater ecosystems. Biodiversity Data Journal 10: e94411. https://doi.org/10.3897/BDJ.10.e94411
|
Freshwater ecosystems are amongst the most threatened habitats on Earth; nevertheless, they support about 9.5% of the known global biodiversity while covering less than 1% of the globe’s surface. A number of anthropogenic pressures are impacting species diversity in inland waters and, amongst them, the spread of invasive alien species is considered one of the main drivers of biodiversity loss and homogenisation in freshwater habitats.
Crayfish species are widely distributed freshwater invaders and, while alien species introductions occur mostly accidentally, alien crayfish are often released deliberately into new areas for commercial purposes. After their initial introduction, crayfish species can rapidly establish and reach high-density populations as a result of their adaptive functional traits, such as their generalist diet.
The Louisiana crayfish Procambarus clarkii (Girard, 1852) is globally considered one of the worst invaders and its impact on recipient freshwater communities can vary from predation and competition with native species, to modification of food webs and habitat structure and introduction of pathogens. Native to the south United States and north Mexico, P. clarkii has been introduced in Europe, Asia and Africa, determining negative ecological and economic impacts in the majority of invaded habitats where it became dominant within the receiving benthic food webs. Due to its flexible feeding strategy, P. clarkii exerts adverse effects at different trophic levels, ultimately affecting the structure and dynamics of invaded food webs. It is, therefore, paramount to evaluate the ecological consequences of P. clarkii invasion and to quantify its impact in a spatially explicit context.
In the past decades, the analysis of stable isotopes of carbon, nitrogen and other elements has become a popular methodology in food web ecology. Notably, stable isotope analysis has emerged as a primary tool for addressing applied issues in biodiversity conservation and management, such as the assessment of the trophic ecology of non-indigenous species in invaded habitats. Here, we built two geo-referenced datasets, resolved respectively at the population and individual scale, by collating information on δ13C and δ15N values of P. clarkii within invaded inland waters. The population-scale dataset consists of 160 carbon and nitrogen isotopic values of the Louisiana crayfish and its potential prey, including living and non-living primary producers and benthic invertebrates. The dataset resolved at individual scale consists of 1,168 isotopic records of P. clarkii. The isotopic values included within the two datasets were gathered from 10 countries located in Europe, Asia, Africa and North America, for a total of 41 studies published between 2005 and 2021. To the best of the authors’ knowledge, this effort represents the first attempt to collate in standardised datasets the sparse isotopic information of P. clarkii available in literature. The datasets lend themselves to being used for providing a spatially explicit resolution of the trophic ecology of P. clarkii and to address a variety of ecological questions concerning its ecological impact on recipient aquatic food webs.
invasive species, Louisiana crayfish, red swamp crayfish, stable isotopes, ecological impact
Crayfish species are amongst the most successful and widespread freshwater invaders worldwide (
After the initial introduction, crayfish can quickly spread and colonise new habitats thanks to their dispersal ability, including the capacity of some species to travel long distances and even overland at times (
The impact of P. clarkii spans from predation and competition with native species, to disruption of food webs and habitat structure and introduction of pathogens (
As an opportunistic feeder (
The two datasets presented herein collate geo-referenced δ13C and δ15N values of P. clarkii and its potential prey in invaded inland and brackish waters. The dataset resolved at population scale includes mean values and standard deviations of δ13C and δ15N for the Louisiana crayfish populations and their potential animal and vegetal prey. The individual-scale dataset collates isotopic values of single specimens of P. clarkii, similarly to the dataset with stable isotopes of the Atlantic blue crab Callinectes sapidus published by
The two datasets can be used for a variety of comparative analyses including the calculation of the trophic position of the Louisiana crayfish (population-scale dataset) and the calculation of metrics and descriptors of its isotopic niche (individual-scale dataset) accounting for isotopic differences in the baseline at each location. Both are examples of input files used for the Crustaceans workflow of the LifeWatch ERIC Internal Joint Initiative. The analytical workflow aims at identifying regional-scale climatic predictors of the trophic position of the two model invasive crustaceans, i.e. P. clarkii and the Atlantic blue crab C. sapidus.
LifeWatch ERIC Internal Joint Initiative - Functional biogeography of invaders: the case of two widely-distributed omnivorous crustaceans (https://bit.ly/iji-crustaceans)
Cristina Di Muri, Giorgio Mancinelli, Ilaria Rosati, Lucia Vaira
The geographic coverage of the two datasets includes Europe, Asia, Africa and North America (Fig.
List of study sites included in the datasets where isotopic data of Procambarus clarkii and its prey were collected. For each study site, information on country, location, habitat, sampling year and associated reference IDs are reported (full reference list in Suppl. material
Country | Locality (no. of sites) | Habitat | Year sampling | Resolution | Reference ID |
---|---|---|---|---|---|
USA | Nevada, Ash Meadows National Wildlife Refuge (1) | Spring | 1999-2000 | Population | 1 |
Japan | Lake Biwa Basin (1) | River | 2003 | Population | 2 |
USA | Hawaii, Hainako stream (2) | Stream | 2006 | Population | 3 |
France | Garonne River Basin (1) | River | 2007-2008 | Population | 4 |
Japan | Namegawa (1) | Pond | 1999-2000 | Population | 5 |
USA | Hawaii, Opaekaa stream (1) | Stream | 2008-2009 | Population | 6 |
France | Rhone River Basin (1) | Stream | 2009 | Population | 7 |
Japan | Shizuoka Prefecture (1) | Pond | 2009 | Population | 8 |
The Netherlands | Lake Terra Nova (1) | Lake | 2011 | Population | 10 |
Kenya | Lake Navaisha (1) | Lake | 2001-2008 | Individual | 11 |
Japan | Lake Biwa (2) | Lake | 2007 | Population | 12 |
China | Lake Chaohu (1) | Lake | 2003 | Population | 13 |
Spain | Guadalquivir River Basin (3) | River | 2000-2001 | Individual | 14 |
France | Aquitaine (3) | Lake/River | 2009-2010 | Population | 15 |
Japan | Asahi River (1) | River | 2009 | Population | 16 |
USA | Nevada, Ash Meadows National Wildlife Refuge (1) | Spring | 2011-2012 | Population | 17 |
Japan | Lake Teganuma (1) | Lake | 2009 | Population | 18 |
China | Lake Gucheng (1) | Pond | 2013 | Population | 19-20 |
Spain | Ebro River Basin (1) | Reservoir | 2006 | Population | 9-21 |
Japan | Lake Izunuma (1) | Lake | 2006 | Population | 22 |
France | Garonne River Basin (15) | Lake | 2012 | Individual | 23 |
USA | Washington State (5) | Lake | 2009 | Population | 24 |
Spain | Ebro River Basin (1) | Lagoon | 2015-2016 | Population | 25 |
Italy | Lake Trasimeno and Lake Bolsena (2) | Lake | 2014 | Population | 26 |
France | Garonne River Basin (1) | Lake | 2014 | Individual | 27 |
USA | Washington State (5) | Lake | 2014 | Individual | 27 |
Italy | Arno River (1) | River | 2018 | Population | 28 |
Spain | Lake Arreo (1) | Lake | 2017 | Individual | 29-30 |
France | Garonne River Basin (7) | Lake | 2014 | Individual | 31 |
Portugal | Quarteira River Basin (2) | Stream | 2015 | Population | 32 |
China | Huangshui River Basin (1) | Reservoir | 2015-2016 | Population | 33 |
Japan | Lake Izunuma (1) | Pond | 2008 | Population | 34 |
Spain | Albufera de València (1) | Marsh | 2018 | Population | 35 |
Italy | Monterotondo (1) | Pond | 2016 | Population | 36 |
France | Garonne River Basin (3) | Stream | 2019 | Population | 37 |
France | Aquitaine (3) | Lake | 2015 | Population | 38 |
Japan | Tojooka Basin (1) | Pond | 2014-2016 | Population | 39 |
Hungary | Danube River Basin (1) | Stream | 2018 | Population | 40 |
China | Lake Dongting (28) | Lake | 2017 | Individual | 41 |
Each isotopic record included in the datasets is associated with the corresponding geographical and temporal information of the sampling event including country, location, geographical coordinates (latitude and longitude in decimal degrees), type of habitat and sampling date. In the dataset resolved at population scale, δ13C and δ15N values of putative prey are specified together with other biological features, such as the invasive or native nature of the species for each location. Stable isotope values can be used for downstream analyses as, for example, the calculation of the trophic position (see
LifeWatch ERIC Internal Joint Initiative
The literature search was concluded on 17 January 2022.
The Google Scholar engine was used to search for relevant bibliographic sources using the keywords "Procambarus clarkii" and "stable isotopes" and a total of 651 publications were returned. Peer-reviewed articles and grey literature material were individually inspected in order to identify the bibliographic sources with stable isotope information of the Louisian crayfish and of its potential prey in tabular or graphical format; 41 studies performed in both freshwater and transitional environments and published between 2005 and 2021 were ultimately selected (Table
Only records with specified locations were included in the datasets. The location accuracy was checked using Google Earth and, when geographical coordinates were not explicit, the maps of the study sites included in the publications were used to retrieve them. Geographical coordinates were converted to decimal degrees when not originally specified as such. A taxonomic check was additionally performed using the World Register of Marine Species, the GBIF Backbone Taxonomy and the Integrated Taxonomic Information System to check the current accepted scientific names of all taxa included in the datasets.
Procambarus clarkii is an omnivore species feeding on vegetal (e.g. algae and leaf detritus) and animal prey including invertebrates (e.g. insect larval stages, oligochaetes, gastropods) and vertebrates (e.g. amphibians and fish) depending on resources availability (
In general, primary producers, including living (e.g. macrophytes, periphyton etc.) and non-living (i.e. detritus) organisms were preferentially used as reference for the selection of the baseline species included in the population-scale dataset. In few instances, herbivorous gastropods, aquatic larval stages of insects and other invertebrates occurring at the study sites and characterised by a trophic position = 2 were chosen (i.e. Reference ID 12 in Suppl. material
The population-scale dataset additionally includes the sample size of each isotopic record as well as the standard deviations of mean δ13C and δ15N values. When the standard deviations were not available (i.e. Reference ID 10 in Suppl. material
\(\sigma = \frac{\text{range}}{3\sqrt{ln(n)} - 1.5}\)
The datasets gather isotopic values of P. clarkii and its potential prey in invaded lotic and lentic habitats across 10 countries (Table
The dataset resolved at individual scale includes only carbon and nitrogen isotopic values of P. clarkii, whereas, the population-scale dataset is a collection of mean isotopic values of P. clarkii and its potential prey, including vegetal and animal prey.
Rank | Scientific Name |
---|---|
class | Gastropoda (Cuvier, 1797) |
order | Amphipoda |
order | Ephemeroptera |
family | Asellidae |
family | Chironomidae |
family | Cyrenidae (Gray, 1840) - Corbiculidae in the original publication |
family | Culicidae (Meigen, 1818) |
family | Lymnaeidae (Rafinesque, 1815) |
family | Sialidae |
genus | Corbicula (Megerle von Mühlfeld, 1811) |
genus | Dreissena (Beneden, 1835) |
genus | Echinogammarus (Stebbing, 1899) |
genus | Ephydra |
genus | Gammarus (J. C. Fabricius, 1775) |
genus | Myriophyllum L. |
genus | Poa L. |
genus | Potamogeton L. |
genus | Spirogyra (Link, 1820) |
species | Alisma plantago-aquatica L. |
species | Gabbia longicornis (Benson, 1842) - Alocinma longicornis in the original publication |
species | Anodonta anatina (Linnaeus, 1758) |
species | Asellus aquaticus (Linnaeus, 1758) |
species | Sinotaia quadrata (Benson, 1842) - Bellamya aeruginosa in the original publication |
species | Cipangopaludina chinensis (Gray, 1833) - Bellamya chinensis in the original publication |
species | Cheumatopsyche analis (Banks, 1903) |
species | Corbicula fluminea (O. F. Müller, 1774) |
species | Dreissena polymorpha (Pallas, 1771) |
species | Epophthalmia elegans (Brauer, 1865) |
species | Hydrochara affinis (Sharp, 1873) |
species | Macrobrachium nipponense (De Haan, 1849) |
species | Mentha aquatica L. |
species | Phragmites australis (Cav.) Trin. ex Steud. |
species | Pomacea maculata (Perry, 1810) |
species | Potentilla anserina L. |
species | Riccia fluitans L. |
species | Semisulcospira reiniana (Brot, 1876) |
species | Sparganium erectum L. |
species | Stenopsyche marmorata (Navas, 1920) |
species | Radix auricularia (Linnaeus, 1758) - Radix auricularia japonica in the original publication |
This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 Licence.
A description of the dataset is provided below. Wherever possible, the dataset attributes were labelled using standard vocabularies and terms harvested from Darwin Core, LifeWatch ERIC Ecoportal and NERC Vocabulary Server.
Column label | Column description |
---|---|
catalogNumber | An identifier (preferably unique) for the record within the dataset or collection. |
associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence. |
country | The name of the country or major administrative unit in which the Location occurs. |
locality | The specific description of the place. |
habitat | A category or description of the habitat in which the Event occurred. |
eventDate | The date-time or interval during which an Event occurred. |
decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. |
decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. |
taxonName | Name of the biological entity, taxonomic group or lowest level of taxonomic rank that could be determined. |
establishmentMeans | Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans (https://dwc.tdwg.org/em/#dwcem_e). |
trophicRole | Statement specifying whether the species is a predator or a prey. |
d13C_VPDB_biota | The ratio of carbon 13 relative to carbon 12 in a biological organism identified elsewhere in the metadata, expressed in per mille and relative to the international reference Vienna Pee Dee Belemnite standard. |
SD_d13C_VPDB_biota | The square root of the average of the squares of deviations about the mean of a set of values of the specified measurement. |
d15N_biota | The ratio of nitrogen 15 relative to nitrogen 14 in a biological organism identified elsewhere in the metadata, expressed in per mille and relative to atmospheric air. |
SD_d15N_biota | The square root of the average of the squares of deviations about the mean of a set of values of the specified measurement. |
sampleSizeValue_d13C | A numeric value for the measurement of the size (number of samples) in a sampling event for the isotope of the chemical element carbon. |
sampleSizeValue_d15N | A numeric value for the measurement of the size (number of samples) in a sampling event for the isotope of the chemical element nitrogen. |
trophicLevel | Any of the feeding levels through which the passage of energy through an ecosystem proceeds; examples are photosynthetic plants, herbivorous animals and microorganisms of decay. |
A description of the dataset is provided below. The dataset attributes were labelled using standard vocabularies and terms harvested from Darwin Core, LifeWatch ERIC Ecoportal and NERC Vocabulary Server.
Column label | Column description |
---|---|
catalogNumber | An identifier (preferably unique) for the record within the dataset or collection. |
associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence. |
country | The name of the country or major administrative unit in which the Location occurs. |
locality | The specific description of the place. |
habitat | A category or description of the habitat in which the Event occurred. |
eventDate | The date-time or interval during which an Event occurred. |
scientificName | The full scientific name, with authorship and date information, if known. When forming part of an Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the IdentificationQualifier term. |
decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. |
decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. |
d13C_VPDB_biota | The ratio of carbon 13 relative to carbon 12 in a biological organism identified elsewhere in the metadata, expressed in per mille and relative to the international reference Vienna Pee Dee Belemnite standard. |
d15N_biota | The ratio of nitrogen 15 relative to nitrogen 14 in a biological organism identified elsewhere in the metadata, expressed in per mille and relative to atmospheric air. |
The authors thank Lucia Vaira (LifeWatch ERIC Service Centre) for her assistance with the data and metadata publication and Iva Johovic for helping with the initial phase of data collection.
Cristina Di Muri: Data collection, standardisation and publication, data analysis, writing - original draft, final review and editing.
Paloma Alcorlo, Roberta Bardelli, Jordi Catalan, Esperança Gacia, Maria Teresa Guerra, David X. Soto and Salvatrice Vizzini: data providers - final review and editing.
Ilaria Rosati: data standardisation, data and metadata publication and final quality check - final review and editing.
Giorgio Mancinelli: conceptualisation, data collection and analysis, writing - original draft, final review and editing.
List of bibliographic references used for isotopic data collection of Procambarus clarkii and potential prey.