Biodiversity Data Journal :
Taxonomy & Inventories
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Corresponding author: Xiao-Yan Yang (yangxy@eastern-himalaya.cn)
Academic editor: Ning Jiang
Received: 23 Oct 2022 | Accepted: 02 Dec 2022 | Published: 16 Dec 2022
© 2022 Fa Zhang, Saranyaphat Boonmee, Jutamart Monkai, Xiao-Yan Yang, Wen Xiao
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhang F, Boonmee S, Monkai J, Yang X-Y, Xiao W (2022) Drechslerella daliensis and D. xiaguanensis (Orbiliales, Orbiliaceae), two new nematode-trapping fungi from Yunnan, China. Biodiversity Data Journal 10: e96642. https://doi.org/10.3897/BDJ.10.e96642
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Nematode-trapping fungi are a highly specialised group in fungi and are essential regulators of natural nematode populations. At present, more than 130 species have been discovered in Zygomycota (Zoopagaceae), Basidiomycota (Nematoctonus), and Ascomycota (Orbiliaceae). Amongst them, nematode-trapping fungi in Orbiliaceae have become the research focus of carnivorous fungi due to their abundant species. During the investigation of carnivorous fungi in Yunnan, China, four fungal strains isolated from burned forest soil were identified as two new nematode-trapping species in Drechslerella (Orbiliaceae), based on multigene phylogenetic analysis and morphological characters.
Drechslerella daliensis sp. nov. is characterised by its ellipsoid, 1–2-septate macroconidia, clavate or bottle-shaped, 0–1-septate microconidia and unbranched, simple conidiophores. D. xiaguanensis sp. nov. is characterised by fusiform or spindle-shaped, 2–4-septate conidia and unbranched, simple conidiophores. Both of them produce constricting rings to capture nematodes. The phylogenetic analysis, based on combined ITS, TEF1-α and RPB2 sequences, determined their placement in Drechslerella. D. daliensis forms a basal lineage closely nested with D. hainanensis (YMF1.03993). D. xiaguanensis forms a sister lineage with D. bembicodes (1.01429), D. aphrobrocha (YMF1.00119) and D. coelobrocha (FWY03-25-1).
carnivorous fungi, constricting rings, new species, Orbiliaceae, taxonomy
Nematode-trapping fungi are important predators that capture nematodes by specialised trap structures (
Drechslerella was established by
The studies of nematode-trapping fungi have been poorly addressed in extreme habitats (
The soil samples were collected from a burned forest in Cangshan Mountain, Dali City, Yunnan Province, China (
The soil samples were sprinkled on corn meal agar (CMA) plates with sterile toothpicks. Free-living nematodes (Panagrellus redivivus Goodey) were added as bait to promote the germination of nematode-trapping fungi. After three weeks of incubation at 26°C, the plates were observed under a stereomicroscope to find the spores of nematode-trapping fungi. A single spore was transferred to a fresh CMA plate using a sterile toothpick, repeating this step until the pure culture was obtained.
Fungal isolates were transferred to fresh potato dextrose agar plate (PDA) using a sterile toothpick and incubated at 26°C for colony characteristics observation. The pure cultures were transferred to fresh CMA observation plates (an observation well of 2×2 cm was made by removing the agar from the centre of the CMA plate) and incubated at 26°C. When the mycelium overspread the observation well, about 500 nematodes (P. redivivus) were added to the well to induce the formation of trapping devices. The types of trapping devices were checked using a stereomicroscope. All morphological characters were captured and measured with an Olympus BX53 microscope (Olympus Corporation, Japan).
The genomic DNA was extracted from the mycelium grown on PDA plates according to the method described by
The sequences generated in this study were compared against the NCBI GenBank database using BLASTn (BLASTn; https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome; accessed on 16 July 2022). The morphological and BLASTn search results placed these two species in the genus Drechslerella. Drechslerella were searched in the Index Fungorum (http://www.indexfungorum.org; accessed on 16 August 2022) and Species Fungorum (http://www.speciesfungorum.org; accessed on 16 August 2022) and all relevant records were checked individually according to the relevant documents to ensure that all Drechslerella taxa were considered in this study (
GenBank accession numbers of isolates included in this study. The type strains are marked with T at the end of the strain number. The newly-generated sequences are indicated in bold.
Taxa | Strain numbers | GenBank accession numbers | Reference | ||
ITS | TEF1-α | RPB2 | |||
Arthrobotrys conoides | YMF1.00009 | MF948387 | MF948544 | MF948468 | Unpublished |
Arthrobotrys guizhouensis | YMF1.00014T | MF948390 | MF948547 | MF948471 | Unpublished |
Arthrobotrys shizishanna | YMF1.00022 | MF948392 | MF948549 | MF948473 | Unpublished |
Dactylaria sp. | YNWS02-7-1 | AY773457 | AY773399 | AY773428 |
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Dactylellina appendiculata | CBS 206.64T | AF106531 | DQ358227 | DQ358229 |
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Dactylellina copepodii | CBS 487.90T | U51964 | DQ999835 | DQ999816 |
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Dactylellina mammillata | CBS229.54T | AY902794 | DQ999843 | DQ999817 |
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Dactylellina yushanensis | CGMCC 3.19713T | MK372061 | MN915113 | MN915112 |
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Drechslerella anchonia | CBS109.37 | AY965753 | —— | —— |
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Drechslerella aphrobrocha | YMF1.00119 | MF948397 | —— | MF948477 | Unpublished |
Drechslerella bembicodes | 1.01429 | MH179731 | —— | MH179835 | Unpublished |
Drechslerella brochopaga | 701 | AY773456 | AY773398 | AY773427 |
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Drechslerella brochopaga | 1.01829 | MH179750 | —— | MH179852 | Unpublished |
Drechslerella brochopaga | CBS218.61 | U51950 | —— | —— |
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Drechslerella brochopaga | ATCC 96710 | EF445987 | —— | —— |
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Drechslerella brochopaga | DHP 212 | U72609 | —— | —— |
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Drechslerella brochopaga | BCRC 34361 | FJ380936 | —— | —— |
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Drechslerella brochopaga | H.B.9925 | KT222412 | —— | —— |
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Drechslerella brochopaga | H.B.9965 | KT380104 | —— | —— |
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Drechslerella brochopaga | 6178 | DQ656615 | —— | —— |
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Drechslerella coelobrocha | FWY03-25-1 | AY773464 | AY773406 | AY773435 |
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Drechslerella coelobrocha | 1.0148 | MH179744 | MH179847 | Unpublished | |
Drechslerella dactyloides | 1.00031 | MH179690 | MH179554 | MH179799 | Unpublished |
Drechslerela dactyloides | expo-5 | AY773463 | AY773405 | AY773434 |
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Drechslerella dactyloides | 1.00131 | MH179705 | —— | MH179813 | Unpublished |
Drechslerella daliensis | CGMCC 3.20131 | MT592896 | OK556701 | OK638157 | This study |
Drechslerella daliensis | DLU22-1 | OK643974 | OK556700 | OK638158 | This study |
Drechslerella doedycoides | YMF1.00553 | MF948401 | —— | MF948481 | Unpublished |
Drechslerella doedycoides | CBS 586.91 | MH862283 | —— | —— |
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Drechslerella doedycoides | CBS175.55 | MH857432 | —— | —— |
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Drechslerella effusa | YMF1.00583 | MF948405 | MF948557 | MF948484 | Unpublished |
Drechslerella effusa | CBS 774.84 | MH861835 | —— | —— |
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Drechslerella hainanensis | YMF1.03993 | KC952010 | —— | —— |
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Drechslerella heterospora | YMF1.00550 | MF948400 | MF948554 | MF948480 | Unpublished |
Drechslerella polybrocha | CBS 319.56 | MH857657 | —— | —— |
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Drechslerella polybrocha | CCRC 32872 | U51973 | —— | —— |
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Drechslerella polybrocha | DHP 133 | U72606 | —— | —— |
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Drechslerella polybrocha | H.B. 8317 | KT222361 | —— | —— | Unpablished |
Drechslerella stenobrocha | YNWS02-9-1 | AY773460 | AY773402 | AY773431 |
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Drechslerella xiaguanensis | CGMCC 3.20132 | MT592900 | OK556699 | OK638159 | This study |
Drechslerella xiaguanensis | DLU23-1 | OK643975 | OK556698 | OK638160 | This study |
Drechslerella yunnanensis | 1.01863 | MH179759 | —— | MH179861 | Unpublished |
Drechslerella yunnanensi | YMF1.03216 | HQ711927 | —— | —— |
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Vermispora fusarina | YXJ02-13-5 | AY773447 | AY773389 | AY773418 |
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SYM+I+G, GTR+I+G and GTR+I+G models were selected as best-fit optimal substitution models for ITS, TEF1-α and RPB2, respectively, via jModelTest v.2.1.10 (
MrBayes v. 3.2.6. (
IQ-Tree v.1.6.5 (
Maximum Parsimony (MP) analysis was performed via the web CIPRES Science Gateway v. 3.3 (
The trees were visualised with FigTree v.1.3.1 (
Colonies white, cottony, slow-growing on PDA medium, reaching 50 mm diameter after 18 days at 26°C. Mycelium hyaline, septate, branched, smooth. Conidiophores 125–335 µm (x̅ = 216.5 µm, n = 50) long, 3–6.5 µm (x̅ = 4.5 µm, n = 50) wide at the base, 2–3.5 µm (x̅ = 3 µm, n = 50) wide at the apex, hyaline, erect, septate, unbranched, bearing a single conidium at the apex. Conidia two types: Macroconidia 20–49.5 × 8.5–15 µm (x̅ = 38.5–12 µm, n = 50), hyaline, smooth, ellipsoid, broadly rounded at the apex, truncate at the base, 1–2-septate, mostly 2-septate. Microconidia 6.5–22 × 3.5–7 µm (x̅ = 15.5–5 µm, n = 50), hyaline, smooth, clavate or bottle-shaped, broadly rounded at the apex, truncate at the base, 0–1-septate. Chlamydospores not observed. Capturing nematodes with three-celled constricting rings, in the non-constricted state, the outer diameter is 21–32 µm (x̅ = 26 µm, n = 50), the inner diameter is 12–21 µm (x̅ = 15.5 µm, n = 50), stalks 5.5–11 µm (x̅ = 8.5µm, n = 50) long and 4–6.5 µm (x̅ = 5µm, n = 50) wide (Fig.
D. daliensis differs from D. hainanensis by its thinner macroconidia and shorter microconidia.
The species name “daliensis” refers to the locality (Dali) of the type specimen.
China, Yunnan Province, Dali City, from burned forest soil.
Colonies white, cottony, slow-growing on PDA medium, reaching 50 mm diameter after 15 days at 26°C. Mycelium hyaline, smooth, septate, branched. Conidiophores 145–315 µm (x̅ = 208.5 µm, n = 50) long, 3–6 µm (x̅ = 4 µm, n = 50) wide at the base, 2–3 µm (x̅ = 2.5 µm, n = 50) wide at the apex, hyaline, erect, septate, unbranched, bearing a single conidium at the apex. Conidia 33–52 × 9.5–28 µm (x̅ = 42.5–15.5 µm, n = 50), hyaline, smooth, fusiform, spindle-shaped, rounded and swollen at the both ends, 2–4-septate, mostly 3-septate, germinating tubes produced from both ends. Chlamydospores not observed. Capturing nematodes with three-celled constricting rings, in the non-constricted state, the outer diameter is 19–27.5 µm (x̅ = 24 µm, n = 50), the inner diameter is 12.5–20.5 µm (x̅ = 17 µm, n = 50), stalks 5–11.5 µm (x̅ = 9 µm, n = 50) long and 4.5–6 µm (x̅ = 5 µm, n = 50) wide (Fig.
D. xiaguanensis differs from D. aphrobrocha by its smaller conidia and swollen cells at both ends of conidia.
The species name “xiaguanensis” refers to the locality (Xiaguan) of the type specimen.
China, Yunnan Province, Dali City, Cangshan Mountain, from burned forest soil.
A total of 15 Drechslerella related taxa were listed in Index Fungorum (http://www.indexfungorum.org; accessed on 16 August 2022) and Species Fungorum (http://www.speciesfungorum.org; accessed on 16 August 2022), representing 15 valid Drechslerella species. Amongst them, 13 species have available molecular data. The combined ITS, TEF1-α and RPB2 sequence dataset contained 42 nematode-trapping taxa in Orbiliaceae (3 Arthrobotrys species, 4 Dactylellina species and 35 Drechslerella taxa representing 15 species). The final dataset comprised 1939 characters (ITS = 591, TEF1-α = 534 and RPB2 = 814), including 807 conserved characters, 1072 variable characters and 748 parsimony-informative characters. After Maximum Likelihood (ML) analysis, a best-scoring likelihood tree was obtained with a final ML optimisation likelihood value of -7146.589745. For Bayesian analysis (BI), the first 25% of trees were discarded in a burn-in period, the consensus tree was calculated with the remaining trees and the Bayesian posterior probabilities were evaluated with a final average standard deviation of the split frequency of 0.009547. Within Maximum Parsimony (MP) analysis, a strict consensus tree was obtained from the two equally most parsimonious trees (TL = 2817, CI = 0.471, RI = 0.514, RC = 0.296, HI = 0.404). The trees inferred by ML, MP and BI showed similar topologies. Therefore, the best-scoring ML tree was selected for presentation (Fig.
Maximum Likelihood tree, based on combined ITS, TEF1-α and RPB2 sequence data from 42 nematode-trapping taxa in Orbiliaceae. Bootstrap support values for Maximum Parsimony (red) and Maximum Likelihood (black) equal or greater than 50% and Bayesian posterior probabilities values (green) greater than 0.90 are indicated above the nodes. New isolates are in blue, ex-type strains are in bold.
The phylogram inferred from the ITS+TEF1-α+RPB2 dataset clustered 42 Orbiliaceae nematode-trapping fungi into two large clades according to their mechanisms for catching nematodes: 1) The genus Drechslerella that captures nematodes by mechanical force (
Drechslerella daliensis and D. xiaguanensis produce constricting rings to capture nematodes, which is consistent with the genus Drechslerella (
Phylogenetically, D. daliensis (CGMCC3.20131) forms a sister lineage to D. hainanensis (YMF 1.03993) with 97% MLBS, 96% MPBS and 0.95 BYPP support (Fig.
In the phylogenetic analysis, D. xiaguanensis (CGMCC3.20131) forms a sister lineage to D. bembicodes (1.01429), D. aphrobrocha (YMF1.00119) and D. coelobrocha (FWY03-25-1) with 100% MLBS, 100% MPBS and 1.00 BYPP support (Fig.
Amongst nematode-trapping fungi, species in Arthrobotrys are the dominant group in most ecosystems due to their strong reproductive and saprophytic ability, while the species in Dactylellina and Drechslerella, with weaker competitive abilities were rare (
This research was supported by the National Natural Science Foundation Program of P.R. China [Project ID: 31360013, 31460015], the National Natural Science Foundation Program-Yunnan union fund [Project ID:U1602262].