Biodiversity Data Journal :
Data Paper (Biosciences)
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Corresponding author: Matheus Colli-Silva (matheus.colli.silva@alumni.usp.br)
Academic editor: Anatoliy Khapugin
Received: 05 Jan 2023 | Accepted: 22 Mar 2023 | Published: 30 Mar 2023
© 2023 Matheus Colli-Silva, James Richardson, José Pirani
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Colli-Silva M, Richardson JE, Pirani JR (2023) A taxonomic dataset of preserved specimen occurrences of Theobroma and Herrania (Malvaceae, Byttnerioideae) stored in 2020. Biodiversity Data Journal 11: e99646. https://doi.org/10.3897/BDJ.11.e99646
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Species from the "cacao group" are traditionally allocated into two genera, Theobroma and Herrania (Malvaceae, Byttnerioideae), both groups of Neotropical species economically relevant, such as the cacao tree (Theobroma cacao), which forms the source of chocolate. This study aimed at compiling and describing a dataset of preserved specimen collections available in the Global Biodiversity Information Facility repository (GBIF) for Tropical Americas. Data were exhaustively revisited and analysed in terms of taxonomic identity, conditions of collection and georeferencing, all of which should enable downstream taxonomic, geographic and evolutionary analyses.
Our dataset compiles 7975 records of preserved specimen collections found at herbaria. Records are from 18 species of Theobroma and 14 of Herrania, occurring in 60 countries or major territories, with two species endemic to a single country (H. kofanorum from Ecuador and H. laciniifolium from Colombia). Occurrence records are mostly restricted to the Amazon rainforest and species with more occurrence records are cupuí, T. subincanum (1535 records), followed by the cacao tree, T. cacao (1500 records), the latter having cultivated specimens in Africa, Asia and Oceania. In the case of the genus Herrania, H. nitida and H. purpurea are the species with the majority of occurrences (respectively, 431 and 273 records). Most of the botanical samples from these genera are found in American, Brazilian and Colombian collections, with a particular strength for American herbaria. We describe how occurrence records are spread spatially and temporally and highlight key field expeditions responsible for enhancing most of the knowledge of cacao and its wild relatives, especially in countries where they prevail, such as Colombia (with 29 species), Ecuador (23 species), Brazil (18 species) and Peru (15 species). Specifically, expeditions in these countries were led by American and European initiatives in conjunction with local funding in the mid-20th century. We emphasise how initiatives of such kind seems to have weakened in the 21st century and most of the collections of Theobroma and Herrania made afterwards are from various collectors that seek to resample specimens in already explored sites.
Amazonia, chocolate, flowering plants, herbarium collections, online repository
As holders of most of vascular plant species richness in Earth (
The last comprehensive contributions on the diversity of the cacao group are the revision of Theobroma (
Morphologically, Herrania is distinguished from Theobroma by its branching architecture (monopodial vs. sympodial in Theobroma), compound leaves (vs. simple leaves in Theobroma), as well as by the trimerous calyx (vs. usually pentamerous in Theobroma) and for having the upper portion of an unguiculate petal (the ligule) much longer in Herrania than in Theobroma (
General morphology of Theobroma L. and Herrania Goudot. a leaves of H. mariae Goudot, focusing on one leaflet; b flower of T. obovatum Klotzsch ex Bernoulli; c flower of H. pulcherrima Goudot; d bark of T. obovatum, notice the marked presence of lenticels; e fruit of T. angustifolium DC.; (f) fruit of T. bicolor Humb. & Bonpl.; g flowering branch of T. grandiflorum (Willd. ex Spreng.) K.Schum.; h general aspect of a small individual of T. speciosum Willd. ex Spreng.; i general aspect of H. nitida (Poepp.) R.E.Schult.; j fruit of T. grandiflorum; k flowers and i fruits of T. speciosum; m main stem of H. purpurea (Pittier) R.E.Schult. with flowers and fruits growing on the trunk; n reproductive structures of T. glaucum H.Karst.; o flower of H. kanukuensis R.E.Schult. Photos: M. Pellegrini (a-f, h, i); J.E. Richardson (k-n); R.A. Howard (g), obtained from iNaturalist; R. Chapalbay (j), obtained from iNaturalist; S. Sant (o), obtained from iNaturalist. All photos are under CC BY-NC 4.0 license.
Perhaps due to its long historical and economical importance, wild cacao species are well-known by many American societies. Most species are locally known as cacao, cacao-del-monte, cacaorana, cacauí, cupuí, sasha-cacahuillo or derivatives and Herrania, despite being relatively less known than its sister-genus Theobroma, can be rapidly recognised as a cacao relative and is locally called as cacau-jacaré or cacao-azul (blue cacao). One particular species, Theobroma cacao L., forms the source of chocolate and it is potentially native to Western Amazonia, but widely cultivated in many areas in Mesoamerica and overseas (see, amongst other references,
Field expeditions in the Amazon Basin in search for wild cacao species were carried out in the 20th century, alongside the rise of the chocolate industry and the development of Brazil, Peru and Colombia towards inner areas. The Anglo-Colombian Cacao Collecting Expedition (
These expeditions enabled the development of subsequent taxonomic treatments for the groups mentioned above (
We aimed at building a dataset of preserved specimen records of cacao and its wild relatives (genera Theobroma and Herrania), with a particular strength in Tropical Americas, where both genera are native to, but eventually also comprising records overseas. This dataset includes revisited data only of preserved specimen collections (i.e. data deposited in herbaria) and should enable downstream works with systematics, conservation and evolution of a Neotropical group of relevance in Tropical Americas.
Our dataset was first obtained from the GBIF database, downloaded on 3 August 2020 (
The downloaded dataset (
Georeferencing followed standard protocols described in
A total of 5277 entries (66%) maintained their coordinates as informed in the voucher label, while 1960 entries (25%) had dubious or ambiguous coordinates and could not have a locality properly assigned (Table
Classes of georeferenced data according to coordinate revision. Based on data of Suppl. material
Checking status |
Entries |
Percent |
Coordinates maintained or assigned according to the information on the label |
5277 |
66% |
Previously informed coordinates dubious or ambiguous and could not be properly corrected |
1960 |
25% |
Georeferencing corrected accordingly |
738 |
9% |
All entries |
7975 |
100% |
Most Theobroma and Herrania records are located in Western Amazonia, reaching Panama and Mesoamerica (Fig.
Distribution of preserved specimen occurrences (A) and species richness (B) of cacao and its wild relatives (Theobroma and Herrania). Tropical Americas at 1º grid-cells. Preliminary results generated on 3 May 2021. Grid maps were made using the “speciesgeocodeR” package v. 2.0 in R Environment (
It should be noted that other countries outside the native range of the genera, namely in Africa, Tropical Asia and in the Antilles, are distinguished by having introduced specimens, such as Afghanistan, Trinidad and Tobago and Guinea (see Suppl. material
A few specimens can be found inside Amazonian protected areas or in primary forests along rivers, especially in the region outlined by Colombia, Peru, Ecuador and north-western Brazil. Relevant protected areas with most records are Yasuni National Park, Rio Caquetá, Reserva Faunistica Cuyabeno, Parque Nacional Natural Amacayacu and Parque Nacional Yanachaga-Chemillen. Even though some areas have been extensively collected, some studies even suggest that, in some cases, suitable areas where cacao and relatives occur are mostly unprotected, as seems to be the case for Colombia (
The Anglo-Colombian Cacao Expedition was carried out between 1952 and 1953 by Richard E.D. Baker, Francis William Cope, Paul C. Holliday, Basil G.D. Bartley and D.J. Taylor, with the participation of Richard Schultes, who produced Herrania's monograph (
Historical collections of the four selected expeditions of Theobroma and Herrania, carried out by José Cuatrecasas, Richard E. Schultes, Boris A. Krukoff and the Anglo-Colombian Cacao Collecting Expedition, led by Richard E.D. Baker, Francis William Cope, Paul C. Holliday, Basil G.D. Bartley and D.J. Taylor, from the Imperial College of Tropical Agriculture, Trinidad.
Brazilian Amazonia is relatively less known in collections of Theobroma and Herrania than other countries, especially considering its larger area. Furthermore, spatial bias in this region is high and most collections are made in areas near rivers or major railways close to urban clusters (
Results of sampling bias analysis, which estimates the effects of the main drivers for collection sampling (collecting near rivers, city areas, airports or roads). At the study scale of 0.25 degrees, "sampbias" found a major relevance of rivers and a moderate relevance of cities in delimiting the collection bias of wild cacao species. Sampling bias analysis was conducted using the package "sampbias" v. 1.0.5 in R Environment (
Mapping of sampling bias effects of wild cacao species occurrences in Tropical Americas considering the main drivers for biasing effects (rivers, cities, airports and roads). At the study scale of 0.25 degrees, the mapping shows how river has a major effect in collection biasing for the specimens of this study. Sampling bias mapping analysis was conducted using the package "sampbias" v. 1.0.5 in R Environment (
Further collecting endeavours in Brazil, namely the Projeto Flora Amazônica, were important for gathering new collections of Theobroma and Herrania in the Amazon rainforest. The Projeto Flora Amazônica took place in the 70s (
Amazonian collections have historically been undocumented and underestimate the real richness of the area (
-25.591 and 29.644 Latitude; -104.962 and -34.8667 Longitude.
By the time of this analysis, periods of collection peaks are observed in 2014, with 491 new entries in a single year, followed by 1992, with 252 new entries and then by several years from 70s to 90s (Fig.
The history of cacao collecting expeditions is marked by numerous expeditions led by American or European botanists, in contrast with a few led by Latin American teams. Consequently, most preserved specimens are found at American or European herbaria, especially at MO, NY, US, F, U, L and K collections.
Below, we describe a chronological sketch of the most relevant moments where wild cacao species collections were made over the last centuries, according to our dataset and considering the chronology summarised in Fig.
ca. 1689
The epoque of the first known record used as type of a name of Theobroma, collected by Sir Hans Sloane (1660-1753), a British physician and naturalist who travelled to the Caribbean, where he documented his travels and collected the first specimen of Theobroma cacao L. from Jamaica, which was later assigned as the lectotype of Theobroma cacao L. by
1775
First dated collection made of Theobroma with known location and collector. This specimen was collected by Jean Baptiste Aublet (1720-1778), a French botanist who worked with the French Guiana flora. This collection, first labelled as “Cacao guianensis Aubl.”, the type of its name, is originally ascribed to the surroundings Cayenne and it is actually a Theobroma speciosum Mart. The material is deposited at the Natural History Museum (BM).
1777-1778
The Spanish botanists Hipólito López (1754-1816) and José Pavón y Jiménez (1754-1840) and the French naturalist Joseph Dombey (1742-1794) led the Botanical Expedition to the Viceroyalty of Peru, collecting more than 3,000 botanical samples deposited mostly in the Royal Botanical Garden of Madrid (MA), with duplicates sent to the Field Museum (F) and to the Missouri Botanical Garden (MO). This expedition culminated in the production of ten volumes of the Flora Peruviana et Chilensis prodromus (see
1787-1803
Accomplishment of “The Spanish Royal Botanical Expedition to New Spain” (Plantae Novae Hispaniae), also known as the “[Martín de] Sessé & [José Mariano] Mociño Expedition”, led by many botanists familiar with works of Linnaeus and Nilokaus Jacquin. The expedition was carried out in the actual region of Mexico, Guatemala, Nicaragua, Cuba and Porto Rico reaching the north-western US, with an estimated number of plant collections varying between 8,000-10,000 (
1825-1830
William Burchell (1781-1863), an English naturalist, travelled to Brazil collecting a large amount of plants, but especially insects. Such expedition culminated in the publication of Catalogus Geographics Plantarum Brasiliae Tropicae. Records of T. subincanum and T. grandiflorum are part of Burchell’s collections, which can be found in London, at the Royal Botanic Gardens, Kew (K).
1830
First known collection of Herrania made by Eduard F. Poeppig (1798-1868), a German botanist who worked as a naturalist in Cuba and made expeditions in Chile, Peru and Brazil, publishing Reise in Chile, Peru und dem Amazonenstrome, während der Jahre 1827-1832. Collections of Herrania nitida (Poepp.) R.E.Schult., are from this time. Poeppig’s collections of Theobroma are deposited at the Naturalis Biodiversity Center (L, U and WAG collections), Field Museum (F) and at the Natural History Museum of Vienna (W).
1843-1846
Justin Goudot (1802-1850), a French naturalist, made field expeditions in Colombia, where he collected many species of vertebrates (
1851
Richard Spruce (1817-1893), a British botanist, made his first collections of Theobroma from this time, with records of T. sylvestre, T. grandiflorum and T. speciosum. These specimens are samples from his journey to Amazonia (dated mostly from 1849 to 1864), starting from the Andes up to the upper Amazon River, collecting in Brazil, Ecuador and Peru (
1858
Paul Sagot (1821-1888), a French botanist who collected in Guiana, making new collections of Theobroma in the area. Sagot’s collections are deposited at the French National Herbarium (P) and at the Royal Botanic Gardens, Kew (K).
1874-1875
James Trail (1851-1919), a Scottish botanist, made expeditions in the Upper Amazon and tributaries, including northern Brazil, where he made collections of Theobroma. Trail’s collections are deposited at Royal Botanic Gardens, Kew (K) and at the French National Herbarium (P).
1880
Auguste Glaziou (1829-1906), a French botanist, collected in Brazil between 1861 and 1895, making collections of Theobroma, which can be found at the French National Herbarium (P).
1891-1911
Henry Pittier (1857-1950), a Swiss botanist, explored areas of Panama, Colombia and Venezuela (
1904-1969
Adolpho Ducke (1876-1959), an Austrian botanist naturalised in Brazil, made several collections in the Brazilian Amazon, where he studied many plants and published several works for the area, including with Theobroma (
1905-1919
Auguste Chevalier (1873-1956), a French botanist, made new collections of Theobroma species, especially T. cacao from Africa, where he studied T. cacao morphotypes and cacao cultivar classification.
1914
Orator Cook (1867-1949) and Conrad Doyle (1884-1973), both American botanists from the Smithsonian Institution (US), led expeditions in Mexico, Colombia, Costa Rica and Guatemala, where they identified stilt palms and collected, amongst other species, cacaos from Guatemala.
1903-1910
A team of Dutch botanists arrived in Suriname, collecting specimens of Herrania from the area which, after World War II, were all sent to the Naturalis Biodiversity Center collection of Utrecht (U) (
1906-1929
Walter Broadway (1863-1935), an English naturalist, served as gardener in the Royal Botanic Gardens (K) and later as superintendent in Trinidad, where he made Theobroma collections also in French Guiana and Venezuela. Most of his duplicates are found in BM, K, MO and P.
1929-1942
Llewelyn Williams (1901-1980), an English botanist who was interested in botanical products from tropical regions, conducted extensive field expeditions in northern South America, following the margins of the Orinoco River Basins. Most of his collections are deposited at the Field Museum (F).
1916-1948
Ellsworth Killip (1890-1968) and Albert Smith (1906-1999), American botanists from the Smithsonian Institution (MO), collected extensively in Colombia, Brazil, Cuba, Jamaica, Panama, Peru and Venezuela, where they had the opportunity to collect wild cacao species from these areas. Duplicates were mostly sent to MO, F and US.
1920-1933
Guillermo Klug (-1946), a Peruvian parabotanist, made extensive collections in Amazonian Peru and Colombia, contributing with the knowledge of wild cacao species and other elements of the flora of the area. Most of its specimens and notes were sent to US herbaria, with duplicates at F and NY.
1928-1950
Boris A. Krukoff (1898-1983), a Russian botanist, led numerous expeditions in Amazonia, collecting wild cacao species mostly between 1931 and 1939 in the Basin of Rio Solimões in Brazil.
1938-1945
Frederick J. Pound (1919-1944), a British biologist from the Imperial College Station of London, established the first cacao germplasm collection, leading expeditions in Upper Amazonia, in Rio Ucayali, Rio Morona and Rio Marañón in Peru and Ecuador (
1939-1969
José Cuatrecasas (1903-1996), a Spanish botanist from the Jardim Botánico de Madrid (MA), conducted extensive trips in South America, collecting in Colombia, Venezuela and Ecuador. Cuatrecasas spent years of his life studying plants, with a particular focus in the genus Theobroma, describing new species and publishing the seminal taxonomic revision of the genus (
1942-1960
Richard E. Schultes (1915-2001), an American ethnobotanist from Harvard University, led expeditions in South America and Mexico, mostly looking for useful plants used by indigenous people. During this time, he also became interested in the wild cacao species, especially those of the genus Herrania. His interest and fieldwork resulted in the publication of Herrania’s synopsis (
1942
William Archer (1894-1973), an American economic botanist from the Smithsonian Institution (US), carried out expeditions in Pará, Brazil, where he collected many samples of Theobroma. Most of the duplicates were sent to US and F.
1945-1946
Ricardo Fróes (1891-1960), a Brazilian botanist associated to the Instituto Agronômico do Norte, in Belém do Pará, led expeditions in the region of Fonte Bôa, Amazonas, Brazil, from where some collections of Theobroma are derived.
1953-1967
Elbert Luther Little, Jr. (1907-2004) and Ruby Rema Little (1907-2009), both American botanists, collected in Venezuela and Costa Rica. Most duplicates of these expeditions can be found at F.
1951-1963
Victor Patiño (1912-2001), a Colombian botanist, led expeditions in Andean countries (Venezuela, Colombia, Peru, Ecuador, Bolivia and Chile), depositing most of his samples at Medellín Germplasm Bank with duplicates sent to F and US collections.
1952-1953
Period of the Anglo-Colombian Cacao Collecting Expedition. With expeditions led by the American botanists in collaboration with the Imperial College of Tropical Agriculture of Trinidad and the Colombian Government, the areas explored included the rivers Caquetá, Apaporis, Vaupés, Negro and tributaries towards Putumayo and El Chocó (
1963-1975
Roelof Oldeman (1937-), a Dutch botanist from the Natural History Museum (BM), made several trips to the Guianas and northern Brazil, collecting samples of Theobroma and Herrania. Most of its wild cacao species collections can be found at U, US and P.
1965-1966
Basett Maguire (1904-1991), an American botanist from the New York Botanical Garden (NY), led an expedition to the Serra da Neblina Expedition, collecting in the region of Rio Negro and Rio Cauaburí, in Brazil. This expedition was conducted by the University of Brasilia in conjunction with the Instituto Nacional de Pesquisas da Amazonia (INPA) and the New York Botanical Garden (NY), with funds from the National Science Foundation. Maguire's collections from that time can be found at INPA and NY.
1964-1989
Ghillean T. Prance (1937-), an English botanist, led the Projeto Flora Amazônica, an initiative funded by the Brazilian Government and the National Science Foundation, aiming at collecting in particular areas of the Brazilian Amazonia. Collections from this project include Theobroma and Herrania and are mainly found at INPA, US and NY.
1968-1972
Thomas Croat (1938-), an American botanist interested in systematics and ecology of Araceae, made expeditions in the region of Loreto, in Peru, where he collected samples of wild Theobroma and Herrania species, mostly deposited at F, MO and NY.
1969-2005
José Schunke-Vigo (1929-2018), a Peruvian botanist, collected Theobroma and Herrania especially in the Peruvian Amazonia, contributing greatly with the Flora of Peru (
1971-1991
Paul Maas (1939-), a Dutch botanist from Urecht University (U), carried out expeditions in the Guianas and in Ecuador to publish floristic treatments for these regions, where he also collected Theobroma and Herrania. Maas travelled to over twenty countries, often visiting each place more than once and he was mostly accompanied by other colleagues and students on his trips (
1973-1983
Ronald Liesner (1944-), an American Botanist from the Missouri Botanical Garden (MO), made expeditions in the region of Costa Rica and Panama, collecting samples of Theobroma and Herrania purpurea, with most materials found at MO.
1976-1986
Juan Revilla, a Peruvian botanist working in the Instituto Nacional de Pesquisas da Amazônia (INPA), Brazil, led expeditions in Peru, mostly under the auspices of the Flora do Peru project, in collaboration with the Missouri Botanical Garden (MO) and the Field Museum (F), funded by the National Science Foundation. Most of Revilla's collections can be found at F, INPA and MO.
1974-1997
Scott Mori (1941-2020), an American botanist from the New York Botanical Garden (NY), coordinated expeditions in several sites of Brazil and Suriname, the latter supported by the Fund for Neotropical Plant Research. Most of Mori's Theobroma and Herrania samples were sent to American collections of US and NY.
1976-1978
The Project “Plantas da Amazônia”, also funded by the National Science Foundation in conjunction with Brazilian Government, explored areas Brazil’s Amapá State, with most Theobroma and Herrnia samples found at MO, F and US.
1980-1986
Carlos D. Cid-Ferreira, a Brazilian botanist, based at the Instituto Nacional de Pesquisas da Amazonia, led several expeditions to different areas of Amazonia, including Acre, Rondônia, Pará and Amazonas States, reaching newly-collected areas. Many vouchers of Theobroma and Herrania collected in this occasion were deposited at INPA and duplicates were sent to American collections.
1989-1999
Marion Jansen-Jacobs (1944-), a Dutch botanist, made expeditions in the Guianas, in association with the Utrecht University (U), where most of his samples of Theobroma and Herrania species can be found.
2000-onwards
Collections of different authors prevailed from that time and focused expeditions became less recurrent. In fact, many of the recent expeditions are characterised by revisiting recollected spots. One exception is the Colombian Expedition "Cacao BIO" conducted in 2020, where more than 5000 samples and 200 samples of wild cacao species were collected in many parts of Colombia. This expedition was coordinated by the Corporación Colombiana de Investigación Agropecuaria - AGROSAVIA and the dataset is avaialble in GBIF (
Four botanical expeditions are relevant to the increase of wild cacao species collections, as described in Fig.
Attribution 4.0 International (CC BY 4.0).
GBIF Occurrence Dataset, with 15,849 occurrences included in download.
Column label | Column description |
---|---|
citations.txt | Provide citations to the datasets consulted to merge the dataset. |
meta.xml | Specify the structure of the occurrence.txt file. |
metadata.xml | Specify the structure of the whole dataset. |
multimedia.txt | Disposes the links to access image files for entries with digitised vouchers or entries with photos associated. |
occurrence.txt | Provides the occurrence dataset in DarwinCode format. |
rights.txt | Lists the right licence for all datasets used in this dataset. |
verbatim.txt | Provides the occurrence dataset in DarwinCode format. |
dataset | Folder containing metafiles for all datasets used in this database. |
Dataset resultant from GBIF-mobilised data, after curation, cleaning, georeferencing and selection of wild preserved specimen collections of Theobroma and Herrania from Tropical Americas and overseas.
Column label | Column description |
---|---|
basisOfRecord | The specific nature of the data record. |
gbifID | Unique identifier for an occurrence record in GBIF. |
taxonRank | The taxonomic rank of the most specific name in the scientificName. |
genus | The full scientific name of the genus in which the taxon is classified. |
scientificName_after_revision | The full scientific name, with authorship, after manual revision of the record. |
scientiticName_original | The full scientific name, with authorship, as originally informed in the dataset prior revision. |
decimalLatitude_after_revision | The geographic latitude (in decimal degrees) of the geographic centre of a Location, after manual revision and georeferencing. |
decimalLongitude_after_revision | The geographic longitude (in decimal degrees) of the geographic centre of a Location, after manual revision and georeferencing. |
licence | A legal document giving official permission to do something with the resource. |
institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. |
collectionCode | The name, acronym, coden or initialism identifying the collection or dataset from which the record was derived. |
datasetName | The name identifying the dataset from which the record was derived. |
ownerInstitutionCode | The name (or acronym) in use by the institution having ownership of the object(s) or information referred to in the record. |
catalogNumber | An identifier (preferably unique) for the record within the dataset or collection. |
recordedBy.new | Name of the primary collector for recording the original occurrence, after data standardisation. |
recordNumber.new | Collection number for recording the original occurrence, after data standardisation. |
recordedBy | Name of the primary collector for recording the original occurrence, as originally informed in the record, prior standardisation. |
recordNumber | Collection number for recording the original occurrence, as originally informed in the record, prior to standardisation. |
eventDate | The date-time or interval during which an Event occurred (ISO 8601-1:2019). |
countryCode | The standard code for the country in which the Location occurs (ISO 3166-1-alpha-2), as originally informed in the record, prior to revision. |
stateProvince | The name of the first administrative region (state, province, canton, department, region etc.) in which the Location occurs, as originally informed in the record, prior to revision. |
county | The full, unabbreviated name of the second administrative region (county, shire, department etc.) in which the Location occurs, as originally informed in the record, prior to revision. |
municipality | The full, unabbreviated name of the third administrative region (city, municipality etc.) in which the Location occurs, as originally informed in the record, prior to revision. |
locality | Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup), as originally informed in the record, prior to revision. |
imageChecking | Image checking criteria after assessing the record for revision, categorised as "No image seen to examine voucher, look at herbaria", "Not seen at herbaria, but image seen online properly", "Physically seen at herbaria and checked at herbarium" or "Voucher not seen online, but image of one or more of its duplicates seen". |
georeferencingChecking | Georeferencing checking after assessing the record information on geographic occurrence, categorised as "Coordinates previously informed dubious or ambiguous and could not correct properly", "Coordinates previously informed in the label and not altered", "Could not georeference properly" or "Georeferencing corrected accordingly". |
country.new | The full name of country or territory in which the Location occurs, after occurrence revision. |
stateProvince.new | stateProvince in which the Location occurs, after occurrence revision. |
municipality.new | Municipality in which the Location occurs, after occurrence revision. |
locality.new | Locality in which the Location occurs, after occurrence revision. |
Resol.orig | Resolution of the occurrence record prior to data revision. |
Resolution.stand | Resolution of the occurrence record after data revision. |
loc.check | Occurrence transformation status after standardisation. |
We thank CAPES (Coordination for the Improvement of Higher Education Personnel) for financing the post-graduation programme in which MCS was enrolled. Additionally, we thank FAPESP (the São Paulo Research Foundation) for funding this research (ID Grants 2020/01375-1 and 2020/10206-9). Finally, we are grateful to IAPT (the International Association for Plant Taxonomy) for the Grant provided to the first author.
MC-S: Conceptualisation; Methodology; Validation; Formal analysis; Investigation; Data Curation; Writing - Original Draft; Visualisation.
JER: Writing - Review & Editing; Supervision.
JRP: Validation; Writing - Review & Editing; Supervision; Resources; Project administration; Funding acquisition.
Species occurrence dataset, with preserved specimen records of species of Theobroma and Herrania, after downloading the preliminary dataset from GBIF and providing the data manipulation framework.
Full description of the preserved specimen collection records across each country in Tropical Americas, per species of Theobroma and Herrania.
Much of the biographic data of authors were taken from