Latest Articles from Biodiversity Data Journal Latest 20 Articles from Biodiversity Data Journal https://bdj.pensoft.net/ Fri, 29 Mar 2024 12:20:47 +0200 Pensoft FeedCreator https://bdj.pensoft.net/i/logo.jpg Latest Articles from Biodiversity Data Journal https://bdj.pensoft.net/ Ukrainian Plant Trait Database: UkrTrait v. 1.0 https://bdj.pensoft.net/article/118128/ Biodiversity Data Journal 12: e118128

DOI: 10.3897/BDJ.12.e118128

Authors: Denys Vynokurov, Dariia Borovyk, Olha Chusova, Anastasia Davydova, Denys Davydov, Jiří Danihelka, Iwona Dembicz, Svitlana Iemelianova, Ganna Kolomiiets, Ivan Moysiyenko, Viktor Shapoval, Oleksandr Shynder, Nadiia Skobel, Oksana Buzhdygan, Anna Kuzemko

Abstract: Considering the growing demand for plant trait data and taking into account the lack of trait data from Eastern Europe, especially from its steppic region, we launched a new Ukrainian Plant Trait Database (UkrTrait v. 1.0) aiming at collecting all the available plant trait data from Ukraine.To facilitate further use of this database, we linked the trait terminology to the TRY Plant Trait Database, Thesaurus of Plant Characteristics (TOP) and Plant Trait Ontology (TO). For taxa names, we provide the crosswalks between the Ukrainian checklist and international sources, i.e. GBIF Backbone Taxonomy, World Checklist of Vascular Plants (World Checklist of Vascular Plants (World Checklist of Vascular Plants (WCVP), World Flora Online (WFO) and Euro+Med PlantBase. We aim to integrate our data into the relevant global (TRY Plant Trait Database) and pan-European (FloraVeg.EU) databases. The current version of the database is freely available at the Zenodo repository and will be updated in the future.Until now, plant traits for the Ukrainian flora were scattered across literature, often focusing on single species and written mainly in Ukrainian. Additionally, many traits were in grey literature or remained non-digitised, which rendered them inaccessible to the global scientific community. Addressing this gap, our Ukrainian Plant Trait Database (UkrTrait v. 1.0) represents a significant step forward. We compiled and digitised plant traits from local Ukrainian literature sources. Furthermore, we performed our own field and laboratory measurements of various plant traits that were not previously available in literature. In the current version of the UkrTrait, we focus on vascular plant species that are absent from the other European trait databases, with emphasis on species that are representative for the steppe vegetation. Traits assembled from literature include life span (annuals, biennials, perennials), plant height, flowering period (flowering months), life form (by Raunkiaer), plant growth form and others. Our own measured traits include seed mass, seed shape, leaf area, leaf nitrogen concentration and leaf phosphorus concentration. The current version, i.e. UkrTrait v. 1.0, comprises digitised literature data of 287,948 records of 75 traits for 6,198 taxa and our own trait measurements of 2,390 records of 12 traits for 388 taxa.

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Data Paper Tue, 13 Feb 2024 10:08:32 +0200
Xicotli Data: a project to retrieve plant-bee interactions from citizen science https://bdj.pensoft.net/article/114688/ Biodiversity Data Journal 11: e114688

DOI: 10.3897/BDJ.11.e114688

Authors: Juan Barrios, Brenda Bedolla-García, Paola González-Vanegas, Andrés Lira-Noriega, Juan López-Enriquez, Jorge Mérida-Rivas, Daniel Madrigal-González, Pilar Rodríguez, Matthias Rös, Remy Vandame, Raúl Sierra-Alcocer, Carlos Cultid-Medina

Abstract: Xicotli data is the short name given to the dataset generated within the project framework "Integration of Biodiversity Data for the Management and Conservation of Wild Bee-Plant Interactions in Mexico (2021-2023)", as xicotli is the generic word for a bee in Nahuatl. The team comprised eco-informaticians, ecologists and taxonomists of both native bees and flora. The generated dataset contains so far 4,532 curated records of the plants, which are potential hosts of species of three focal families of bees native to Mexico: Apidae, Halictidae and Megachilidae and morphological and ecological data of the plant-bee interactions. This dataset was integrated and mobilised from citizen observations available at naturalista.mx (iNat), which were compiled through the iNaturalist project.The new information obtained with the Xicotli data project was:Taxonomic information about bee species curated by taxonomists based on the information contained in iNaturalist;Taxonomic identification of the host plants by a botanist from the photos compiled by the Xicotli Data project;Data on the ecomorphological traits of bees and plants based on expert knowledge and literature.All the data were integrated into the Xicotli Data Project via the creation of new “observation fields". The visibility of the information originally contained in iNaturalist was maximized and can be consulted directly on the iNaturalist platform.

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Data Paper Thu, 21 Dec 2023 10:02:12 +0200
Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest https://bdj.pensoft.net/article/87254/ Biodiversity Data Journal 10: e87254

DOI: 10.3897/BDJ.10.e87254

Authors: Petr Novotný, Stefan Seifert, Martin Rohn, Wolfgang Diewald, Milan Štech, Dagmar Triebel

Abstract: The timely and geographical resolutions, as well as the quantity and taxon concepts of records on the occurrence of plants near national borders is often ambiguous. This is due to the regional focus and different approaches of the contributing national and regional databases and networks of the neighbouring countries. Careful data transformation between national data providers is essential for understanding distribution patterns and its dynamics for organisms in areas along the national borders. Sharing occurrence data through the international data aggregator Global Biodiversity Information Facility (GBIF) is also complicated and has to consider that the underlying taxonomic concept and geographic information system of each single GBIF dataset might be different. In addition, some regional data providers have a restrictive (non-cc) licensing policy which does not allow data publication via the GBIF network. Therefore, it is necessary to investigate new ways to make data fit for use for a better and comprehensive understanding of the Flora of the Bohemian Forest.In this paper, we present a bilateral technical interoperability solution for vascular plant occurrence data for the area between the Czech Republic and Bavaria. We describe the initial state of data providers in both countries and the factual and technical challenges in finding a sustainable concept to establish mutual data sharing. The resulting solution for a functional infrastructure and an agreed data pipeline is described in a step-by-step approach. The new distributed infrastructure allows botanists and other stakeholders from both countries to work within the cross-border context of historical and current plants' distribution.

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Software Description Fri, 14 Oct 2022 08:43:14 +0300
Herbarium collection of the Pontificia Universidad Católica de Valparaíso (PUCV), Chile https://bdj.pensoft.net/article/90591/ Biodiversity Data Journal 10: e90591

DOI: 10.3897/BDJ.10.e90591

Authors: Sebastián Cordero, Manuel López-Aliste, Francisca Gálvez, Francisco Fontúrbel

Abstract: This database gathers 10,721 specimens, belonging to 2,578 species from the Chilean vascular flora (angiosperms, gymnosperms and pteridophytes) deposited in the Herbarium of the Pontificia Universidad Católica de Valparaíso (PUCV) in Chile. The PUCV botanical collection was started by the renowned botanist Otto Zöllner and represents a major natural historical legacy for central Chile, with decades of information represented through preserved specimens. This collection is currently deposited in the Curauma campus of the PUCV. This digitisation effort is part of the PUCV's endeavour to mobilise its biological collections and make them freely available through GBIF, encouraging national and international researchers to generate new knowledge, based on this invaluable heritage, which is a silent witness of the vast plant diversity that once existed in Chile and that is now vanishing due to anthropogenic drivers.The database provides occurrence records from 10,721 specimens of vascular flora held in the PUCV Herbarium, representing 2,578 species, 914 genera and 177 families. Each record includes data on taxonomy, geographic distribution, elevation and collection information (e.g. date of collection, legitimavit and determinavit of specimens, general observations). The database serves as a repository containing records from past decades on the diversity and distribution of plant species, mainly from the Chilean Mediterranean biodiversity hotspot.

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Data Paper Thu, 29 Sep 2022 07:40:43 +0300
Pladias platform: Technical description of the database structure https://bdj.pensoft.net/article/80167/ Biodiversity Data Journal 10: e80167

DOI: 10.3897/BDJ.10.e80167

Authors: Petr Novotný, Josef Brůna, Milan Chytrý, Vojtěch Kalčík, Zdeněk Kaplan, Tomáš Kebert, Martin Rohn, Marcela Řezníčková, Milan Štech, Jan Wild

Abstract: Digitising and aggregating local floristic data is a critical step in the study of biodiversity. The integrative web-based platform Pladias, designed to cover a wide range of data on vascular plants, was recently developed in the Czech Republic. The combination of occurrence data with species characteristics opens many opportunities for data analysis and synthesis.This article describes the relational structure of the Pladias database service (PladiasDB) and the context of the platform architecture. The structure is relatively complex, as our goal was to cover: (i) species occurrence records, including their management, validation and export of revised species distribution maps, (ii) data on species characteristics with quality control tools using defined data types and (iii) separate user interfaces (UI) for professionals and the general public. We discuss the approaches chosen to model individual elements in PladiasDB and summarise the experience gained during the first five years of operation of the Pladias platform.

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Software Description Fri, 1 Apr 2022 12:04:59 +0300
Rizoma: a new comprehensive database on traditional uses of Chilean native plants https://bdj.pensoft.net/article/80002/ Biodiversity Data Journal 10: e80002

DOI: 10.3897/BDJ.10.e80002

Authors: Sebastián Cordero, Lucía Abello, Francisca Gálvez

Abstract: We describe Rizoma, a new comprehensive online database on traditional uses of Chilean flora. The Rizoma database was built by reviewing multiple data sources on the uses of native plants and integrating phytogeographic and ecological aspects of plant species. This database attempts to safeguard traditional knowledge by making it available and visible to society, providing 1380 use records from 736 vascular plant species native to Chile. In addition, it contributes to a better understanding of the use patterns of Chilean native plants.The Rizoma database includes 1380 use records from 736 vascular plant species native to Chile, representing 399 genera and 128 families. Each species record provides information on geographic distribution, phytogeographic origin, life form, life span and use category. In addition, the online version includes information on the mode of use of each species, as well as common names and photographs. The database serves as a traditional knowledge repository that contributes to preserving local biological and cultural diversity for future generations.

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Data Paper Fri, 4 Mar 2022 09:08:11 +0200
Plant occurrences on the Rybachy and the Sredny Peninsulas, Murmansk Region, Russia: a dataset https://bdj.pensoft.net/article/77094/ Biodiversity Data Journal 10: e77094

DOI: 10.3897/BDJ.10.e77094

Authors: Ksenia Popova, Anna Razumovskaya

Abstract: The Rybachy and the Sredny Peninsulas are the northernmost part of Murmansk Region in the European part of Russia. While the most part of the Region is covered by boreal forest, the Peninsulas are covered by tundra. The vegetation and flora of Murmansk Region are well studied at present. The Peninsulas were first studied in 1829 by a Finnish botanist Jacob Fellman. The most comprehensive research was conducted in the late 19th - early 20th century. Nevertheless, the species composition of the Peninsulas' flora has changed significantly over the past 100 years due to land use and climate change. The aim of this dataset is to make the data on species occurrences for this territory digitally available via GBIF. To date, more or less complete digital floristic data were provided only by the project for digitising the book "Flora of Murmansk Region" (1953–1966).The present dataset is a part of the project studying the vegetation of the territory. We recorded the information about species frequency and distribution using the relevé method.We present a dataset based on 991 relevés from all vegetation types, which includes 16,289 records of georeferenced plant occurrences that belong to 568 species. There are 23 species of lichens (Ascomycota), 142 species of mosses (Bryophyta), three species of liverworts (Marchantiophyta) and 400 species of vascular plants (Tracheophyta) in the present dataset. The taxonomic diversity and unevenness result from the vegetation sampling. The data were collected in 2008, 2009, 2011, 2014 and 2015. The dataset cannot be considered as a complete vegetation database or a flora checklist, but it contains the occurrences and frequencies of the species from all the vegetation types.

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Data Paper Thu, 6 Jan 2022 13:15:00 +0200
Biomass and mortmass of woody vegetation in metal-contaminated areas (Southern Urals, Russia) https://bdj.pensoft.net/article/75510/ Biodiversity Data Journal 9: e75510

DOI: 10.3897/BDJ.9.e75510

Authors: Igor Bergman, Alexey Nesterkov

Abstract: Since the mid-2000s, long-term monitoring of various components of natural ecosystems under conditions of industrial pollution has been carried out in the Southern Urals. As a part of these monitoring programmes, the data on various components of biota in different biotopes, collected with different methods and in different time intervals, continue to be gathered. In addition, data collected through these monitoring programmes can also be used to study the local biodiversity of non-polluted areas.In 2012, in the vicinity of the Karabash Copper Smelter, a study of communities of small mammals was carried out, considering the heterogeneity of their habitats. Within the framework of this project, we presented a detailed description of the state of woody vegetation in the study area.The dataset (available from the GBIF network at https://www.gbif.org/dataset/61384edd-2d0a-437b-8cf0-ff4d2dfcc0da) includes the results of an assessment of the woody vegetation biomass at seven habitats (pine, birch and floodplain forests, reed swamp, sparse birch stand, marshy meadow and dump of household waste) of areas with different levels of industrial pollution in the vicinities of the Karabash, the Southern Urals. Karabash Copper Smelter (KCS) is one of Russia’s most significant point polluters; the main components of its emissions are heavy metals, dust and sulphur dioxide. Parameters of woody vegetation (diameter at breast height, diameter at root collar level and biomass) were estimated for seven forest elements (forest stand, subcanopy (undergrowth and underwood), half-dead tree of a forest stand and four types of coarse woody debris (downed bole, fragment of downed bole, standing dead tree and stump)) at 41 sampling plots (20 at unpolluted and 21 at polluted areas) and 165 subplots (81 and 84, respectively). The dataset includes 411 sampling events (estimation events of the forest elements at sampling plots and subplots), corresponding to 5786 occurrences (estimations of the woody vegetation components) observed during July 2012. For most woody vegetation components (72%), an estimate of the above-ground phytomass is given. For each sampling event, information on the presence or absence of woody vegetation species at the considered habitats is provided (a total of 1479 occurrences with status "absent"). The dataset can be used for environmental monitoring, sustainable forest management, modelling forest productivity considering global changes, studying the structure and biodiversity of forest cover and assessing forests’ carbon-sequestration capacity. In addition, the dataset provides information about different forest ecosystems under the influence of strong industrial pollution.

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Data Paper Mon, 29 Nov 2021 17:30:00 +0200
Fleroff goes digital: georeferenced records from "Flora des Gouvernements Wladimir" (Fleroff, 1902) https://bdj.pensoft.net/article/75299/ Biodiversity Data Journal 9: e75299

DOI: 10.3897/BDJ.9.e75299

Authors: Alexey P. Seregin, Yurii Basov

Abstract: Global Biodiversity Information Facility (GBIF) has uneven data coverage across taxonomic, spatial and temporal dimensions. Temporal imbalances in the data coverage are particularly dramatic. Thus, 188.3M GBIF records were made in 2020, more than the whole lot of the currently available pre-1986 electronic data. This underscores the importance of reliable and precise biodiversity spatial data collected in early times. Biological collections certainly play a key role in our knowledge of biodiversity in the past. However, digitisation of historical literature is underway, being a modern trend in biodiversity data mining. The grid dataset for the flora of Vladimir Oblast, Russia, includes many historical records borrowed from the "Flora des Gouvernements Wladimir" by Alexander F. Fleroff (also known as Flerov or Flerow). Intensive study of Fleroff's collections and field surveys exactly in the same localities where he worked, showed that the quality of his data is superb. Species lists collected across hundreds of localities form a unique source of reliable information on the floristic diversity of Vladimir Oblast and adjacent areas for the period from 1894 to 1901. Since the grid dataset holds generalised data, we made precise georeferencing of Fleroff's literature records and published them in the form of a GBIF-mediated dataset.A dataset, based on "Flora des Gouvernements Wladimir. I. Pflanzengeographische Beschreibung des Gouvernements Wladimir" by Fleroff (1902), includes 8,889 records of 654 taxa (mainly species) from 366 localities. The majority of records originate from Vladimir Oblast (4,611 records of 534 taxa from 195 localities) and Yaroslavl Oblast (2,013 records of 409 taxa from 66 localities), but also from Nizhny Novgorod Oblast (942 records), Ivanovo Oblast (667 records) and Moscow Oblast (656 records). The leading second-level administrative units by the number of records are Pereslavsky District (2,013 records), Aleksandrovsky District (1,318 records) and Sergievo-Posadsky District (599 records). Georeferencing was carried out, based on the expert knowledge of the area, analysis of modern satellite images and old topographic maps. For 2,460 records, the georeferencing accuracy is 1,000 m or less (28%), whereas for 6,070 records it is 2,000 m or less (68%). The mean accuracy of records of the entire dataset is 2,447 m. That accuracy is unattainable for most herbarium collections of the late 19th century. Some localities of rare plants discovered by Fleroff and included into the dataset were completely lost in the 20th century due to either peat mining or development of urban areas.

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Data Paper Wed, 20 Oct 2021 09:45:00 +0300
Contribution to the "Atlas of the Russian Flora": Twelve local floras of European Russia https://bdj.pensoft.net/article/73013/ Biodiversity Data Journal 9: e73013

DOI: 10.3897/BDJ.9.e73013

Authors: Alexey P. Seregin

Abstract: The purpose of this dataset is to deliver to a wider audience in the form of GBIF-mediated data vast floristic materials collected by the author across various localities of European Russia from 2001-2019 (Arkhangelsk, Tver, Vladimir, Tula, Lipetsk, Voronezh Oblasts, Krasnodar Krai, City of Moscow and Komi Republic). Taxonomic data on vascular plants for ten locations were mobilised from the papers and technical reports published in Russian and standardised. Floristic treatments for two locations (Yasnaya Polyana and Tsaritsyno) have never been published before.The newly-prepared dataset includes 5,309 species records, i.e. one species record per each local flora. These are either native or alien (fully naturalised and casual) species. All records within one local flora have the same centroid coordinates and coordinate uncertainty in metres. Floristic inventories from the following locations were mobilised: 01. Ustya, Arkhangelsk Oblast (543 species, 1,500 km2); 02. Zaseki, Tula Oblast (593 species, 60 km2); 03. Polibino, Lipetsk Oblast (553 species, 70 km2); 04. Khrenovoye, Voronezh Oblast (665 species, 200 km2); 05. Troyeruchitsa, Tver Oblast (501 species, 10 km2); 06. Man-Pupu-Ner, Komi Republic (182 species, ca. 300 km2); 07. Middle Lyaga, Komi Republic (143 species, ca. 300 km2); 08. Utrish, Krasnodar Krai (933 species, 195 km2); 09. Yasnaya Polyana, Tula Oblast (236 species, 2.2 km2); 10. Bogolyubovsky Lug, Vladimir Oblast (289 species, 1.7 km2); 11. Tsaritsyno, City of Moscow (359 species, 5.3 km2); 12. Patakino, Vladimir Oblast (312 species, 1.1 km2). According to the GBIF taxonomic backbone, the dataset covers 1,806 species, 669 genera and 127 families of tracheophytes.

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Data Paper Wed, 15 Sep 2021 17:45:00 +0300
A 30-year update of the climbers and vascular epiphytes inventory of the Cerro Ñielol Natural Monument (La Araucanía, Chile): a database https://bdj.pensoft.net/article/72521/ Biodiversity Data Journal 9: e72521

DOI: 10.3897/BDJ.9.e72521

Authors: Jimmy Pincheira-Ulbrich, Bárbara Vallejos, Jorge Huincaguelo, Ulises Zambrano, Fernando Peña-Cortés

Abstract: Plant species diversity may be seriously threatened in ecotone zones under global climate change. Therefore, keeping updated inventories of indicator species seems to be a good strategy for monitoring wild areas located in these strips. The database comes from an inventory of climbers and vascular epiphytes conducted in the Cerro Ñielol Natural Monument, a small protected area (89 hectares) located in Chile's Mediterranean-temperate phytogeographic region, within the boundaries of the city of Temuco, La Araucaína Region.The data represent the update of the first inventory carried out between 1980 and 1984. In this current contribution, data collection was carried out in 27 quadrats using the trails as transects. The data provide the record of 45 species (16 climbers, 15 epiphytes and 10 trees), including two accidental epiphytes (Acer psudoplatanus L. and Gavilea odoratissima (L.) Endl. ex Griseb.), two species that can be found as epiphytes or terricolous (Hymenophyllum tunbrigense (L.) Sm. and Nertera granadensis (Mutis ex L.f.) Druce) and one species (Chusquea quila Kunth) that can be found as terricolous and climber. Species of interest were recorded on live trees (n = 51), snags (n = 9), stumps (n = 4), fallen log (n = 5) and on the forest soil (n = 17).The most abundant climbers were Hydrangea serratifolia (Hook. & Arn.) F. Phil. (n = 77 stems), Lapageria rosea Ruiz & Pav. (n = 70 stems), Raukaua valdiviensis (Gay) Frodin (n = 48 stems) and Cissus striata Ruiz & Pav. (n = 33 stems). In contrast, the most abundant epiphytes were Hymenophyllum plicatum Kaulf. (n = 1728 fronds) and Hymenophyllum tunbrigense (L.) Sm. (n = 2375 fronds). These latter two species represent the highest frequency and abundance in the whole inventory, respectively. Several ecosystem traits are, in fact, new reports since the first inventory was conducted in 1980-1984; for example, the presence of the filmy fern Hymenophyllum tunbrigense, the record of the climber Elytropus chilensis , fallen logs or the species-host relationship. Accordingly, the database is made available in this manuscript.This study updates the climbers and vascular epiphyte species list in the Cerro Ñielol Natural Monument, a small patch of forest under severe anthropogenic pressure. This protected area is characterised by floristic elements of the Mediterranean and temperate phytogeographic region of Chile, in a zone where forests have been severely deforested. The database includes the record of 45 species – including six species that were not recorded in the first inventory – in 211 records.The main novelty of this contribution is the systematic classification of species, on ten traits rarely reported in a floristic inventory: (i) species taxonomic identity (as usual), (ii) species abundance (number of stems and fronds), (iii) habit (herb, shrub, subshrub, tree), (iv) growth form (accidental epiphyte, epiphyte, vine, liana, terricolous), (v) climbing mechanism (tendrils, adhesive roots, twining, scrambling), (vi) microhabitat (fallen log, footpath slope, soil, stump, trunk), (vii) host species (where appropriate), (viii) host condition (live, woody debris, snag), (ix) host diameter at breast height (DBH) and (x) target species found over 2.3 m on trees.Thirty years after the first inventory conducted between 1980 and 1984, the climber assemblage has remained relatively stable over time, although there are some differences in species composition. Specifically, the climber Elytropus chilensis are recorded in the current inventory, but the Mitraria coccinea (recorded in the first inventory) is not present. On the other hand, the epiphyte assemblage showed an increase in the species richness of filmy ferns, with five previously unrecorded species: Hymenophyllum cuneatum, H. dicranotrichum, H. pectinatum, H. peltatum and H. tunbrigense. One of the novel features was the presence of Sarmienta scandens and Synammia feuillei on a Pinus radiata D. Don tree. Additionally, the introduced species Acer pseudoplatanus is included, which is new to the Chilean vascular plant catalogue. All these data are available in the present manuscript.

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Data Paper Wed, 15 Sep 2021 16:15:00 +0300
Diversity and distribution of vascular plants within the treeline ecotone in Mount Iremel (Southern Urals, Russia) https://bdj.pensoft.net/article/69446/ Biodiversity Data Journal 9: e69446

DOI: 10.3897/BDJ.9.e69446

Authors: Marina Trubina, Alexey Nesterkov

Abstract: During the last 100 years, rapid advances of woody vegetation towards higher elevations and latitudes have been recorded for various regions worldwide, including the Ural Mountains. Climate warming and tree cover increases can lead to significant changes in the high-mountain vegetation. Direct observations on the vegetation of high-mountain regions provide evidence for an increase in the species diversity of plants at high elevations and changes in the composition of the alpine communities. This study investigated the diversity and distribution of vascular plants within the present-day treeline ecotone in Mount Iremel, the Southern Urals.The dataset (Trubina and Nesterkov 2021, available from the GBIF network at https://www.gbif.org/dataset/284f1484-10b7-4ef5-87b7-9de1159e6b42) presents the results of an assessment of species richness and frequency of vascular plants at the different elevation levels (from 1203 to 1348 m a.s.l.) and for the different biotopes (birch-spruce shrub forest, birch-spruce sparse forest, and spruce forest with fragments of meadow plant communities) within the treeline ecotone in the Mount Iremel, the Southern Urals. Observations were carried out at 700 sampling plots with two estimation methods: small-size plot (0.5 × 0.5 m) sampling (672 plots in total) and large-size plot (10 × 10 m) sampling (28 plots). The dataset includes 700 sampling events (=sampling plots), corresponded to 5585 occurrences (vascular plants, mainly identified to species) observed during July 2003. Only occurrences contained plant taxa (occurrenceStatus=present) have been provided. The dataset includes information about distribution and frequency of the Ural endemic species (Anemonastrum biarmiense (Juz.) Holub, Calamagrostis uralensis Litv., Cerastium krylovii Schischk. Et Gorczak., Festuca igoschiniae Tzvel., Hieracium iremelense (Elfstr.) Üksip Lagotis uralensis Schischk, Pleurospermum uralense Hoffm.) and the Pleistocene relict species (Alopecurus glaucus Less., Bistorta vivipara (L.) Delarbre, Cerastium pauciflorum Stev. ex. Ser., Pedicularis oederi Vahl, Saussurea controversa DC., Swertia obtusa Ledeb.). The dataset also provides information that can be useful for estimating biodiversity and plant communities composition within the treeline ecotone at a specified time period and contributes to the study of biodiversity conservation in the Ural region.

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Data Paper Tue, 13 Jul 2021 14:00:00 +0300
Vascular Plant Herbarium at the Kandalaksha Strict Nature Reserve (KAND), Russia https://bdj.pensoft.net/article/59731/ Biodiversity Data Journal 8: e59731

DOI: 10.3897/BDJ.8.e59731

Authors: Mikhail Kozhin, Alexander Sennikov

Abstract: The present-day demand for digital availability of distributional data in biodiversity studies requires a special effort in assembling and editing the data otherwise scattered in paper literature and herbarium collections, which can be poorly accessible or little understood to present-day users and especially automatic data processors. Our project on developing the information resource for the vascular plant flora of Murmansk Region, Russia, includes processing and making digitally available all the data on the taxonomy and distribution of this flora. So far, published distribution maps are limited to the old set in the Flora of Murmansk Region (published in 1953–1966) and Red Data Book of Murmansk Region (ed. 2, published in 2014). These publications did not take into account the main part of the herbarium collections kept at the Kandalaksha Strict Nature Reserve, which are the basis for numerous local publications that appear scattered and therefore little accessible nowadays.We present a complete dataset of all holdings of vascular plants in the Herbarium of the Kandalaksha Strict Nature Reserve, totalling 10,218 specimens collected during 1947–2019, which are referable to 764 species and 19 subspecies. All specimens were georeferenced with the utmost precision available. This dataset offers a complete and dense coverage of the territory of the nature reserve (islands and adjacent mainland coastal areas of the Barents and White Seas, Murmansk Region and Republic of Karelia, Russia); these data are little represented in herbarium collections elsewhere.

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Data Paper Wed, 2 Dec 2020 11:45:00 +0200
"Flora of Russia" on iNaturalist: a dataset https://bdj.pensoft.net/article/59249/ Biodiversity Data Journal 8: e59249

DOI: 10.3897/BDJ.8.e59249

Authors: Alexey Seregin, Dmitriy Bochkov, Julia Shner, Eduard Garin, Igor Pospelov, Vadim Prokhorov, Pavel Golyakov, Sergey Mayorov, Sergey Svirin, Alexander Khimin, Marina Gorbunova, Ekaterina Kashirina, Olga Kuryakova, Boris Bolshakov, Aleksandr Ebel, Anatoliy Khapugin, Maxim Mallaliev, Sergey Mirvoda, Sergey Lednev, Dina Nesterkova, Nadezhda Zelenova, Svetlana Nesterova, Viktoriya Zelenkova, Georgy Vinogradov, Olga Biryukova, Alla Verkhozina, Alexey Zyrianov, Sergey Gerasimov, Ramazan Murtazaliev, Yurii Basov, Kira Marchenkova, Dmitry Vladimirov, Dina Safina, Sergey Dudov, Nikolai Degtyarev, Diana Tretyakova, Daba Chimitov, Evgenij Sklyar, Alesya Kandaurova, Svetlana Bogdanovich, Alexander Dubynin, Olga Chernyagina, Aleksandr Lebedev, Mikhail Knyazev, Irina Mitjushina, Nina Filippova, Kseniia Dudova, Igor Kuzmin, Tatyana Svetasheva, Vladimir Zakharov, Vladimir Travkin, Yaroslav Magazov, Vladimir Teploukhov, Andrey Efremov, Olesya Deineko, Viktor Stepanov, Eugene Popov, Dmitry Kuzmenckin, Tatiana Strus, Tatyana Zarubo, Konstantin Romanov, Alexei Ebel, Denis Tishin, Vladimir Arkhipov, Vladimir Korotkov, Svetlana Kutueva, Vladimir Gostev, Mikhail Krivosheev, Natalia Gamova, Veronica Belova, Oleg Kosterin, Sergey Prokopenko, Rinat Sultanov, Irina Kobuzeva, Nikolay Dorofeev, Alexander Yakovlev, Yuriy Danilevsky, Irina Zolotukhina, Damir Yumagulov, Valerii Glazunov, Vladimir Bakutov, Andrey Danilin, Igor Pavlov, Elena Pushay, Elena Tikhonova, Konstantin Samodurov, Dmitrii Epikhin, Tatyana Silaeva, Andrei Pyak, Yulia Fedorova, Evgeniy Samarin, Denis Shilov, Valentina Borodulina, Ekaterina Kropocheva, Gennadiy Kosenkov, Uladzimir Bury, Anna Mitroshenkova, Tatiana Karpenko, Ruslan Osmanov, Maria Kozlova, Tatiana Gavrilova, Stepan Senator, Maxim Khomutovskiy, Eugene Borovichev, Ilya Filippov, Serguei Ponomarenko, Elena Shumikhina, Dmitry Lyskov, Evgeny Belyakov, Mikhail Kozhin, Leonid Poryadin, Artem Leostrin

Abstract: The "Flora of Russia" project on iNaturalist brought together professional scientists and amateur naturalists from all over the country. Over 10,000 people are involved in the data collection.Within 20 months the participants accumulated over 750,000 photo observations of 6,853 species of the Russian flora. This constitutes the largest dataset of open spatial data on the country’s biodiversity and a leading source of data on the current state of the national flora. About 85% of all project data are available under free licenses (CC0, CC-BY, CC-BY-NC) and can be freely used in scientific, educational and environmental activities.

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Data Paper Tue, 17 Nov 2020 17:15:00 +0200
Biodiversidata: A novel dataset for the vascular plant species diversity in Uruguay https://bdj.pensoft.net/article/56850/ Biodiversity Data Journal 8: e56850

DOI: 10.3897/BDJ.8.e56850

Authors: Florencia Grattarola, Andrés González, Patricia Mai, Laura Cappuccio, César Fagúndez-Pachón, Florencia Rossi, Franco Teixeira de Mello, Lucía Urtado, Daniel Pincheira-Donoso

Abstract: South America hosts some of the world’s most prominent biodiversity hotspots. Yet, Uruguay – a country where multiple major ecosystems converge – ranks amongst the countries with the lowest levels of available digital biodiversity data in the continent. Such prevalent data scarcity has significantly undermined our ability to progress towards evidence-based conservation actions – a critical limitation for a country with a strong focus on agricultural industries and only 1.3% of the land surface guarded by protected areas. Under today’s rapid biodiversity loss and environmental changes, the need for open-access biodiversity data is more pressing than ever before. To address this national issue, Biodiversidata – Uruguay’s first Consortium of Biodiversity Data – has recently emerged with the aim of assembling a constantly growing database for the biodiversity of this country. While the first phase of the project targeted vertebrate biodiversity, the second phase presented in this paper spans the biodiversity of plants.As part of the second phase of the Biodiversidata initiative, we present the first comprehensive open-access species-level database of the vascular plant diversity recorded in Uruguay to date (i.e. all species for which data are currently available and species presence has been confirmed). It contains 12,470 occurrence records from across 1,648 species and 160 families, which roughly represents 60% of the total recorded flora of Uruguay. The primary biodiversity data include extant native and introduced species from the lycophytes, ferns, gymnosperms and angiosperms groups. Records were collated from multiple sources, including data available in peer-reviewed scientific literature, institutional scientific collections and datasets contributed by members of the Biodiversidata initiative. The complete database can be accessed at the Zenodo repository: doi.org/10.5281/zenodo.3954406

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Data Paper Mon, 26 Oct 2020 13:10:09 +0200
Sampling event dataset for ecological monitoring of riparian restoration effort in Colorado foothills https://bdj.pensoft.net/article/51817/ Biodiversity Data Journal 8: e51817

DOI: 10.3897/BDJ.8.e51817

Authors: Richard Levy, Margo Paces, Rebecca Hufft

Abstract:

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Data Paper Fri, 3 Apr 2020 10:00:00 +0300
Check-list of vascular plant communities on ironstone ranges of south-eastern Brazil: dataset for conservation https://bdj.pensoft.net/article/27032/ Biodiversity Data Journal 6: e27032

DOI: 10.3897/BDJ.6.e27032

Authors: Flavio Carmo, Rubens da Mota, Luciana Kamino, Claudia Jacobi

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Taxonomy & Inventories Thu, 12 Jul 2018 09:42:09 +0300
Guide to the littoral zone vascular flora of Carolina bay lakes (U.S.A.) https://bdj.pensoft.net/article/7964/ Biodiversity Data Journal 4: e7964

DOI: 10.3897/BDJ.4.e7964

Authors: Nathan Howell, Alexander Krings, Richard Braham

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Taxonomy & Inventories Tue, 5 Apr 2016 10:16:28 +0300
A benchmark survey of the common plants of South Northumberland and Durham, United Kingdom https://bdj.pensoft.net/article/7318/ Biodiversity Data Journal 3: e7318

DOI: 10.3897/BDJ.3.e7318

Authors: Quentin Groom, John Durkin, John O'Reilly, Andy Mclay, A Richards, Janet Angel, Angela Horsley, Megs Rogers, Gordon Young

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Data Paper Tue, 29 Dec 2015 10:14:30 +0200
Guide to the Vascular Flora of the Savannas and Flatwoods of Shaken Creek Preserve and Vicinity (Pender & Onslow Counties, North Carolina, U.S.A.) https://bdj.pensoft.net/article/1099/ Biodiversity Data Journal 2: e1099

DOI: 10.3897/BDJ.2.e1099

Authors: Robert Thornhill, Alexander Krings, David Lindbo, Jon Stucky

Abstract: Shaken Creek Preserve (“SCP”) is a 2,448 ha (6,050 ac) natural area in Pender and Onslow Counties, North Carolina (U.S.A). Best known for its high-quality longleaf pine savanna habitat, the site contains seven savanna or savanna-like plant community types (i.e., flatwoods or sandhills), three of which are globally critically imperiled (G1): Sandy Pine Savanna (Rush Featherling subtype), Wet Loamy Pine Savanna, and Very Wet Loamy Pine Savanna. SCP hosts three Federally Endangered plant species and six Federal Species of Concern. Formerly a private hunting club, the site was virtually unknown to scientists until the 1990s; consequently, few biological inventories of SCP have been conducted. In particular, no systematic floristic inventories of the species-rich savannas have been undertaken, despite the fact that floristic data is critical to the effective management of any natural area. The goals of this study were to (1) inventory the vascular flora of the savannas, flatwoods, and sandhill community types on site through the collection of voucher specimens; (2) provide a comprehensive checklist of the flora based on collections and reports made from the site and from the same or similar habitats in the vicinity (i.e., within 2 miles of SCP); and (3) create an illustrated guide based on the checklist. In order to increase the usefulness of the guide, taxa not currently known from SCP but collected or reported from the same or similar habitats within two miles of SCP, are included in the guide. Eighty-three families containing 450 taxa, including thirty-two Significantly Rare and thirty-eight Watch List taxa, were collected or reported from SCP; an additional seven families containing a total of 102 taxa, including eighteen Significantly Rare and seven Watch List taxa, were collected or reported from the vicinity. In total, ninety families containing 552 taxa, including fifty Significantly Rare and forty-five Watch List taxa, are treated in the guide. Dichotomous keys are provided to all vouchered or reported families, genera, and species. The following features are provided for all species and infraspecific taxa: flowering and fruiting phenology; synonymy with Manual of the Vascular Flora of the Carolinas, the Flora of North America, and Flora of the Southern and Mid-Atlantic States; relevant voucher information; and, for most taxa, line drawings and/or photographs. For taxa collected from SCP, community types in which the taxa occur and estimates of abundance on site are also provided.

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Taxonomy & Inventories Fri, 16 May 2014 08:34:54 +0300