Characterisation of the Cinnamomum parthenoxylon (Jack) Meisn (Lauraceae) transcriptome using Illumina paired-end sequencing and EST-SSR markers development for population genetics

Article metadata

Introduction

Material and methods

Plant material
RNA isolation and transcriptome sequencing
Functional annotation analysis
Detection of SSR loci and development of SSR primers
DNA extraction and the identification of SSR polymorphism
Data analysis
- Genetic diversity
- Genetic differentiation and population structure

Results

Illumina sequencing and de novo assembly of transcriptome
Functional annotation and classification of unigenes
Frequency, distribution and characterisation of SSRs from the C. parthenoxylon transcriptome
Population genetic diversity and structure

Discussion

Conclusions

Acknowledgements

References

Supplementary files