Biodiversity Data Journal :
Taxonomic Paper
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Corresponding author: Chatmongkon Suwannapoom (chatmongkonup@gmail.com), Jing Che (chej@mail.kiz.ac.cn)
Academic editor: Truong Nguyen
Received: 07 Sep 2021 | Accepted: 09 Oct 2021 | Published: 14 Oct 2021
© 2021 Yun-He Wu, Parinya Pawangkhanant, Jin-Min Chen, Wei Gao, Chatmongkon Suwannapoom, Jing Che
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wu Y-H, Pawangkhanant P, Chen J-M, Gao W, Suwannapoom C, Che J (2021) Confirmation of Leptobrachella ventripunctata (Fei, Ye, and Li, 1990), based on molecular and morphological evidence in Thailand. Biodiversity Data Journal 9: e74097. https://doi.org/10.3897/BDJ.9.e74097
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Thailand is considered a global biodiversity hotspot that is known to harbour a striking diversity of endemic species. However, several research studies have determined that the level of amphibian diversity in the country has been significantly underestimated. The megophryid genus Leptobrachella Smith, 1925 is currently known to include 89 species that are primarily distributed throughout southern China and Southeast Asia; however, only seven species have been found in Thailand.
Based on an integrative approach encompassing genetic and morphological analyses, we have concluded that the population identified from Chiang Rai Province of Thailand is conspecific with Leptobrachella ventripunctata (Fei, Ye, and Li, 1990). Importantly, this is the first confirmation record of this species, based on molecular and morphological evidence in Thailand. The discovery of this species reaffirms that the diversity within the genus has been underestimated with many species yet to be discovered. In addition, the findings of our study further highlight the lack of existing knowledge on amphibian taxonomy and an underestimation of the biodiversity that exists along these national border areas.
Megophryidae, national new record, Chiang Rai Province, 16S rRNA
As a result of the increasing amounts of attention and effort devoted to herpetological research studies in Thailand over the past decade, the present knowledge of Thailand’s amphibian fauna has grown rapidly with newly-described taxa and the addition of new records from the country (e.g.
The frog genus Leptobrachella Smith, 1925 is a key component of the Southeast Asian herpetofauna, which currently includes 89 species mainly being distributed throughout southern China, north-eastern India, Indochina, Malaya, Borneo and Natuna Island (
The species Leptobrachella ventripunctata was originally described from Mengla County, Yunnan, China (
During recent field surveys, conducted in Chiang Rai Province of northern Thailand in 2017, we collected one specimen that we have assigned to the genus Leptobrachella, based on morphological characteristics. Subsequent detailed morphological comparisons and phylogenetic analyses indicate that the newly-identified species in Chiang Rai Province should be assigned to L. ventripunctata. Therefore, we have further confirmed the presence of L. ventripunctata in Thailand.
Field work was conducted in the environs of Doi Tung, Chiang Rai Province, Thailand (
Genomic DNA was extracted from the liver tissue sample using standard phenol-chloroform protocols (
To study the existing phylogenetic relationships amongst Leptobrachella, phylogenetic trees were reconstructed, based on the partial mitochondrial 16S rRNA gene. Homologous sequences of the related species in the genus Leptobrachella and those of the outgroups Megophrys glandulosa (KIZ048439) and Leptobrachium huashen (KIZ049025) (
Localities, voucher ID and GenBank numbers for all samples used in this study.
ID |
Species |
Voucher ID |
Locality |
16S rRNA |
Reference |
Ingroup |
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1 |
Leptobrachella bourreti |
KIZ01599 |
Jinxiu, Guangxi, China |
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2 |
Leptobrachella bourreti |
KIZ048947 |
Dawei Shan, Yunnan, China |
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3 |
Leptobrachella eos |
ZMMU-NAP-02278 |
Vientiane, Laos |
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4 |
Leptobrachella tengchongensis |
SYS a004598 |
Gaoligong Shan, Yunnan, China |
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5 |
Leptobrachella tengchongensis |
SYS a003766 |
Gaoligong Shan, Yunnan, China |
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6 |
Leptobrachella puhoatensis |
IEBR ADPH049 |
Pu Hu Nature Reserve, Thanh Hoa, Vietnam |
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7 |
Leptobrachella liui |
SYS a004035 |
Wugong Shan, Jiangxi, China |
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8 |
Leptobrachella laui |
SYS a002450 |
Shenzhen, Guangdong, China |
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9 |
Leptobrachella maoershanensis |
KIZ07614 |
Mao’er Shan, Guangxi, China |
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10 |
Leptobrachella minima |
NCSM 79224 |
Louangphrabang, Luang Prabang, Laos |
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11 |
Leptobrachella aereus |
NCSM 76038 |
Vilabuly, Savannakhet, Laos |
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12 |
Leptobrachella ventripunctata |
ROM 35750 |
Pu'er, Yunnan, China |
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13 |
Leptobrachella ventripunctata |
ROM 28378 |
Sapa, Lao Cai, Vietnam |
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14 |
Leptobrachella ventripunctata |
KIZ020421 |
Jinuo Shan, Yunnan, China |
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15 |
Leptobrachella ventripunctata |
KIZ014379 |
Caiyanghe, Yunnan, China |
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16 |
Leptobrachella ventripunctata |
KIZ020428 |
Maandi, Yunnan, China |
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17 |
Leptobrachella ventripunctata |
IEBR ADPH050 |
Pu Hu Nature Reserve, Thanh Hoa, Vietnam |
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18 |
Leptobrachella ventripunctata |
NCSM 77715 |
Viengthong, Houaphanh, Laos |
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19 |
Leptobrachella ventripunctata |
NCSM 80550 |
Boun Tay, Phongsaly, Laos |
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20 |
Leptobrachella ventripunctata |
NCSM 80783 |
Kham, Xiangkhouang, Laos |
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21 |
Leptobrachella ventripunctata |
Tissue ID: YPX32065 |
Huanglianshan National Nature Reserve, Yunnan, China |
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22 |
Leptobrachella ventripunctata |
KIZ013621 |
Wenlong, Yunnan, China |
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23 |
Leptobrachella ventripunctata |
ZMMU-NAP-05008 |
Muong Nhe Nature Reserve, Dien Bien, Vietnam |
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24 |
Leptobrachella ventripunctata |
ZMMU-A-5225 |
Xuan Son National Park, Phu Tho, Vietnam |
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25 |
Leptobrachella ventripunctata |
ZMMU-NAP-02272 |
Hoa Binh, Vietnam |
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26 |
Leptobrachella ventripunctata |
ZMMU-NAP-05061 |
Kim Son, Nghe An, Vietnam |
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27 |
Leptobrachella ventripunctata |
ZMMU-NAP-02277 |
Thuong Xuan, Thanh Hoa, Vietnam |
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28 |
Leptobrachella ventripunctata |
ROM 27051 |
Quang Thanh Village, Cao Bang, Vietnam |
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29 |
Leptobrachella ventripunctata |
ZMMU-NAP-02270 |
Bac Giang, Vietnam |
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30 |
Leptobrachella ventripunctata |
ZMMU-A-5604-06331 |
Vinh Phuc, Vietnam |
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31 |
Leptobrachella ventripunctata |
SYS a004536 |
Zhushihe, Yunnan, China |
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32 |
Leptobrachella ventripunctata |
ROM 6945 |
Na Hang Nature Reserve, Tuyen Quang, Vietnam |
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33 |
Leptobrachella ventripunctata |
AUP-00326 |
Doi Tung, Chiang Rai, Thailand |
OK430887 |
This study |
34 |
Leptobrachella nyx |
AMNH A163810 |
Mount Tay Conn Linh, Ha Giang, Vietnam |
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35 |
Leptobrachella nyx |
ROM 35606 |
Malipo, Yunnan, China |
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36 |
Leptobrachella pluvialis |
ROM 30685 |
Fansipan, Lao Cai, Vietnam |
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37 |
Leptobrachella nahangensis |
ROM 7035 |
Na Hang Nature Reserve, Tuyen Quang, Vietnam |
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38 |
Leptobrachella melanoleuca |
KIZ018031 |
Kapoe, Ranong, Thailand |
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39 |
Leptobrachella dringi |
KUHE:55610 |
Gunung Mulu, Malaysia |
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40 |
Leptobrachella heteropus |
KUHE 15487 |
Larut, Perak, Malaysia |
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41 |
Leptobrachella kajangensis |
LSUHC:4431 |
Tioman, Malaysia |
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Outgroups |
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42 |
Megophrys glandulosa |
KIZ048439 |
Yunnan, China |
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43 |
Leptobrachium huashen |
KIZ049025 |
Yunnan, China |
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Phylogenetic reconstructions using Bayesian Inference (BI) and Maximum Likelihood (ML) were executed in the CIPRES web server (
Measurements were taken using a digital caliper to the nearest 0.1 mm. Abbreviations are presented following the method employed by
The final aligned dataset of 16S nucleotide sequences contained 41 individuals with 510 bp. Amongst the 510 sites, 324 were established as conserved sites and 184 were considered variable sites, of which 127 were found to be potentially parsimony-informative sites (excluding outgroups). The Bayesian Inference (BI) and Maximum Likelihood (ML) phylogenetic trees yielded essentially identical topologies. This was true, except for the poorly-supported nodes, which have been integrated in Fig.
Phylogram of Leptobrachella resulting from the analyses of one fragment of the mitochondrial 16S gene. Nodal support values with Bayesian posterior probabilities (BPP) >= 95%/bootstrap support (BS) >= 70 are shown near the node. A “–” denotes Bayesian posterior probabilities (BPP) < 95% and bootstrap support (BS) < 70. Node values with Bayesian posterior probabilities (BPP) < 95%/bootstrap support (BS) < 70 are not shown.
Interspecific genetic divergene (uncorrected p-distance) between the new sample obtained from Chiang Rai, Thailand and the other species of Leptobrachella varied from 4.9% (versus L. bourreti) to 17.9% (versus L. heteropus) (Fig.
Morphologically, the specimen from Chiang Rai shows a similar appearance with original description of L. ventripunctata: pupil vertical; iris distinctly bicoloured; fingers with lateral dermal fringes, absent for toes; belly creamy white with many scattered brown spots. Therefore, we determined that AUP-00326 belonged to L. ventripunctata.
Morphological descriptions of the specimen obtained from Thailand (measurements shown in Suppl. material
Forelimbs slender; relative finger lengths: I<II<IV<III; tips of all fingers rounded and slightly swollen; fingers with lateral dermal fringes; no webbing between fingers; subarticular tubercles distinct, large, near the palm smaller; two palmar tubercles, inner palmar tubercle large, rounded (IPTL 1.6 mm, 5.5% of SVL), outer palmar tubercle relatively small (OPTL 1.0 mm, 3.5% of SVL) (Fig.
Hind-limbs long, foot slightly shorter than tibia, tibia length (TL) 56.1% of SVL, foot length (FL) 51.6% of SVL; tibial-tarsal articulation beyond the tip of the eye when the hind-limb is adpressed along the side of the body; heels overlapping when the flexed legs are held at right angles to the body axis; relative toe length: I<II<III<IV<V; tips of toes rounded and slightly swollen; rudimentary webbing between toes; subarticular tubercles distinct, rounded, inner metatarsal tubercle distinct and oval (IMTL 0.9 mm, 3.1% of SVL), outer metatarsal tubercle distinct (1.0 mm, 3.5% of SVL) (Fig.
Dorsal surfaces of head, body, thigh, tibia and flank of body appear relatively rough with numerous granular spots; ventral surfaces smooth; pectoral gland and femoral gland distinct, oval; pectoral glands larger than femoral glands; supra-axillary gland raised. Ventrolateral gland distinctly visible, forming discontinuous cream-white lines on flanks (Fig.
Dorsal surface appears reddish brown with small reddish tubercles; a dark inverted triangular marking in the interorbital region, a "W"-shaped marking appears between axillae; flanks scattered with some distinct moderate black blotches; upper lips with three black vertical bars; loreal and tympanic region with distinct black markings; supratympanic ridge appears reddish and lower margin of supratympanic fold appears black; elbow to upper arm and tibio-tarsal articulation distinct and reddish-brown in colour on the dorsum; dorsal surface of lower arms, legs, fingers and toes with dark brown crossbars; throat pale with some dusting; belly creamy white with many scattered brown spots; ventrolateral glands, pectoral glands and femoral glands appear white or yellowish-white; ventral surface of limbs appear grey brown with dark brown and white speckling or dots; iris distinctly bicoloured, typically bright orange-red on upper half and silvery-white on lower half (Fig.
This species was previously only known to be indigenous to extreme southern Yunnan, China; Phongsaly, Xiangkhouang and Houaphanh Provinces in Laos; as well as Son La, Vinh Phuc, Thanh Hoa, Tuyen Quang, Cao Bang, Nghe An, Bac Giang, Phu Tho, Hoa Binh, Lao Cai and Dien Bien Provinces in Vietnam (Chen et al. 2018,
This species lives mainly in the litter on both sides of streams. An individual specimen was observed at night sitting on the branch of a shrub that was about 1-2 m off the ground in an evergreen forest surrounded by trees near a stream with nearby herbaceous plants (Fig.
Poyarkov et al. (2021) mentioned the distribution of L. ventripunctata in the extreme north of Thailand, but did not provide any evidence, such as the specific locality, voucher specimens or DNA sequences. This is the first record of the species with morphological data and molecular evidence.
Thailand represents an important component of the Indo-Burma biodiversity hot-spot. Its northern region lies at a biogeographic crossroads where the fauna of China, Indochina, India and Himalaya converge (
Furthermore, our study further highlights a lack of existing knowledge on amphibian taxonomy and identifies an underestimation of the potential biodiversity along these national border areas. In recent years, many new recorded species have been found in border areas, such as Nidirana chapaensis (
This work was supported by the National Natural Science Foundation of China (NSFC 31900323, 32100371) to J.M.C and Y.H.W., the International Partnership Program of CAS (152453KYSB20170033), Southeast Asia Biodiversity Research Institute, CAS (Y4Y4ZK111B01: 2017CASSEABRIQG002) and the Animal Branch of the Germplasm Bank of Wild Species, CAS (Large Research Infrastructure Funding) to J.C.; the Unit of Excellent 2022 on Biodiversity and Natural Resources Management, University of Phayao (FF65-UoE003) and the Thailand Research Fund: DBG6180001 to C.S. We thank Mali Naiduangchan for their assistance and support in fieldwork. We thank reviewers and editor for their helpful comments and constructive suggestions. Specimen was collected under approval from the Institute of Animal for Scientific Purposes Development (IAD), which issued fieldwork permission (No. 610104022).
The mean pairwise uncorrected p-distance (%) of 16S rRNA gene amongst the species of Leptobrachella. Sample ID corresponds to those in Table 1
Average uncorrected p-distances amongst those calculated from 16S rRNA gene sequences
Measurement (in mm) of and proportions of Leptobrachella ventripunctata.